Wall clock time and date at job start Sun Mar 29 2020 22:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 C 1.50698 * 109.47502 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99844 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00426 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00342 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47235 * 60.00290 * 10 8 6 12 12 H 1.48501 * 109.47463 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47109 * 300.00119 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 N 1.28783 * 125.44603 * 300.02872 * 14 2 1 16 16 N 1.28991 * 108.72506 * 179.97438 * 15 14 2 17 17 C 1.33318 * 107.35503 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.55420 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47151 * 89.96846 * 18 17 16 20 20 N 1.46904 * 109.47053 * 180.02562 * 19 18 17 21 21 N 1.28877 * 125.44910 * 119.71999 * 14 2 1 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 26 26 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 27 27 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 28 28 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 29 29 H 0.97002 * 119.99862 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.47401 * 209.97784 * 18 17 16 31 31 H 1.09006 * 109.47037 * 329.97188 * 18 17 16 32 32 H 1.08992 * 109.47452 * 300.00332 * 19 18 17 33 33 H 1.08999 * 109.46637 * 60.00554 * 19 18 17 34 34 H 1.00899 * 110.99916 * 180.02562 * 20 19 18 35 35 H 1.00907 * 110.99913 * 303.95897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 0.0689 2.4953 6 6 2.1369 -0.6417 3.7258 7 1 2.6896 -1.5646 3.6288 8 6 1.8904 -0.1140 4.9755 9 7 1.2170 1.0094 5.0936 10 14 2.5129 -0.9946 6.5007 11 1 3.9930 -1.1005 6.4418 12 1 2.1189 -0.2283 7.7102 13 1 1.9213 -2.3552 6.5629 14 7 2.0184 -0.6906 -1.1962 15 7 1.7724 -1.9169 -1.5034 16 7 2.3589 -2.1898 -2.6193 17 6 2.9921 -1.0858 -3.0163 18 6 3.8149 -0.9241 -4.2685 19 6 2.9149 -0.4535 -5.4129 20 7 3.7169 -0.2964 -6.6336 21 7 2.7583 -0.1666 -2.1121 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 2.0698 1.0675 2.4494 28 1 0.5488 0.1472 2.5389 29 1 1.0438 1.3810 5.9728 30 1 4.5986 -0.1865 -4.0956 31 1 4.2675 -1.8801 -4.5318 32 1 2.1313 -1.1910 -5.5858 33 1 2.4624 0.5025 -5.1495 34 1 3.1449 0.0143 -7.4045 35 1 4.4898 0.3339 -6.4800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:53 Heat of formation + Delta-G solvation = 79.818722 kcal Electronic energy + Delta-G solvation = -16595.398032 eV Core-core repulsion = 13857.816292 eV Total energy + Delta-G solvation = -2737.581740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.38871 -38.36469 -36.74557 -35.35751 -34.40203 -33.51219 -31.07255 -29.64642 -27.39396 -26.07718 -24.59265 -23.54167 -22.58824 -21.41047 -18.95680 -18.16535 -17.89027 -17.12832 -16.50725 -16.27660 -15.91791 -15.47754 -14.80318 -14.72252 -14.33268 -14.15193 -13.96216 -13.44619 -13.28497 -13.14222 -12.91340 -12.67731 -12.54980 -12.40960 -12.28765 -12.01833 -11.92227 -11.75579 -11.60525 -11.34482 -10.93666 -10.55019 -9.66764 -8.22656 -6.32120 0.19775 0.91665 1.10423 1.41065 1.41992 1.50142 2.39946 2.82366 3.11909 3.21951 3.66379 3.68377 3.83027 3.94150 4.05843 4.19757 4.37117 4.43942 4.53978 4.64620 4.66704 4.76144 4.78864 4.97575 4.98037 5.02858 5.13809 5.27767 5.46178 5.64690 5.78916 6.15806 6.20194 6.59814 6.81549 7.34564 7.36619 8.88285 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.053639 B = 0.004048 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.885990 B = 6914.831324 C = 7054.181778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.130 0.870 4 C -0.101 4.101 5 C 0.034 3.966 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.925 5.925 10 Si 0.957 3.043 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.269 1.269 14 N -0.122 5.122 15 N -0.075 5.075 16 N -0.310 5.310 17 C 0.160 3.840 18 C -0.014 4.014 19 C 0.077 3.923 20 N -0.850 5.850 21 N -0.321 5.321 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.006 0.994 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.355 0.645 35 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 0.461 -18.099 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 H 0.148 0.852 4 C -0.141 4.141 5 C -0.004 4.004 6 C -0.586 4.586 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.565 5.565 10 Si 0.782 3.218 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.194 1.194 14 N -0.035 5.035 15 N -0.068 5.068 16 N -0.181 5.181 17 C -0.123 4.123 18 C -0.055 4.055 19 C -0.056 4.056 20 N -0.382 5.382 21 N -0.172 5.172 22 H 0.118 0.882 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.169 0.831 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.834 -0.483 -17.435 17.538 hybrid contribution 0.221 0.928 0.916 1.323 sum 2.055 0.445 -16.518 16.652 Atomic orbital electron populations 1.22177 0.90095 1.04321 1.04566 1.22331 0.97544 0.97019 0.77521 0.85180 1.21827 0.99900 0.99931 0.92409 1.18981 0.96708 0.94443 0.90255 1.21554 1.35716 1.08893 0.92442 0.92840 1.25797 0.95245 0.95691 1.02239 1.70031 1.41023 1.20598 1.24811 0.85620 0.78920 0.78765 0.78488 1.19622 1.20628 1.19442 1.50734 1.28889 1.06720 1.17206 1.78904 1.18385 0.99850 1.09668 1.75799 1.11850 1.25349 1.05062 1.26132 1.00992 0.85779 0.99391 1.19983 0.95474 1.05465 0.84550 1.21521 0.95226 0.99469 0.89377 1.58623 1.14634 1.58662 1.06284 1.74645 1.13670 1.27951 1.00909 0.88179 0.90621 0.91122 0.91642 0.93338 0.97609 0.96027 0.92590 0.87596 0.87342 0.91413 0.95253 0.83052 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.14 71.98 0.66 -3.66 16 2 C 0.15 4.97 3.31 44.99 0.15 5.12 16 3 H 0.13 3.90 8.14 -2.39 -0.02 3.89 16 4 C -0.10 -3.98 4.81 30.59 0.15 -3.83 16 5 C 0.03 1.61 4.73 29.85 0.14 1.76 16 6 C -0.55 -29.86 9.11 25.60 0.23 -29.63 16 7 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 8 C 0.01 0.50 5.46 84.65 0.46 0.97 16 9 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 10 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 N -0.12 -4.06 3.73 -169.57 -0.63 -4.69 16 15 N -0.08 -2.68 12.95 37.02 0.48 -2.20 16 16 N -0.31 -10.39 12.50 -51.26 -0.64 -11.03 16 17 C 0.16 4.59 7.62 138.55 1.06 5.64 16 18 C -0.01 -0.27 6.10 29.85 0.18 -0.09 16 19 C 0.08 1.28 6.77 86.30 0.58 1.87 16 20 N -0.85 -10.64 9.62 -186.71 -1.80 -12.44 16 21 N -0.32 -10.13 12.13 -51.20 -0.62 -10.75 16 22 H 0.10 2.89 6.56 -2.39 -0.02 2.88 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.02 1.05 6.57 -2.38 -0.02 1.03 16 29 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.36 3.33 9.08 -89.70 -0.81 2.52 16 35 H 0.35 3.30 8.99 -89.69 -0.81 2.50 16 Total: -1.00 -63.50 300.80 2.19 -61.31 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -0.52 Total: 9.49 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.61 Total: -21.86 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -2.93 Total: -94.07 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.50 2.19 -61.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.129 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds