Wall clock time and date at job start Sun Mar 29 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29953 * 125.30464 * 2 1 4 4 O 1.41883 * 107.41518 * 179.97438 * 3 2 1 5 5 N 1.41881 * 106.38472 * 359.78822 * 4 3 2 6 6 C 1.29953 * 107.41324 * 0.36195 * 5 4 3 7 7 C 1.50697 * 125.29910 * 179.89581 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.69197 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47018 * 119.99912 * 18 16 14 21 21 H 1.48497 * 109.46891 * 239.99992 * 18 16 14 22 22 H 1.09001 * 109.46871 * 270.00038 * 1 2 3 23 23 H 1.09004 * 109.46892 * 29.99779 * 1 2 3 24 24 H 1.08992 * 109.47272 * 149.99389 * 1 2 3 25 25 H 1.09004 * 109.46763 * 149.69639 * 7 6 5 26 26 H 1.08995 * 109.47483 * 29.69295 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 29 29 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 30 30 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 31 31 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 32 32 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 33 33 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 34 34 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 35 35 H 0.96998 * 119.99555 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0060 6 6 2.3212 -1.1498 0.0005 7 6 1.8209 -2.5713 0.0011 8 7 1.6583 -3.0338 -1.3838 9 6 1.1702 -4.4188 -1.4224 10 1 0.4860 -4.5862 -0.5905 11 6 2.3549 -5.3804 -1.3098 12 6 0.4376 -4.6647 -2.7429 13 6 -0.8174 -3.7914 -2.8001 14 6 -1.5394 -4.0342 -4.1005 15 1 -1.1426 -4.7402 -4.8148 16 6 -2.7066 -3.3547 -4.3782 17 7 -3.1901 -2.4952 -3.5080 18 14 -3.6019 -3.6560 -5.9897 19 1 -2.8577 -4.6624 -6.7888 20 1 -4.9703 -4.1596 -5.7091 21 1 -3.6890 -2.3850 -6.7527 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 0.8607 -2.6183 0.5149 26 1 2.5397 -3.2094 0.5151 27 1 1.0459 -2.4204 -1.9003 28 1 2.8769 -5.2053 -0.3689 29 1 1.9927 -6.4081 -1.3380 30 1 3.0392 -5.2130 -2.1415 31 1 1.0943 -4.4120 -3.5753 32 1 0.1530 -5.7147 -2.8104 33 1 -1.4742 -4.0443 -1.9677 34 1 -0.5329 -2.7414 -2.7326 35 1 -4.0110 -2.0170 -3.7036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:48 Heat of formation + Delta-G solvation = 69.820458 kcal Electronic energy + Delta-G solvation = -16937.742585 eV Core-core repulsion = 14167.434536 eV Total energy + Delta-G solvation = -2770.308048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43370 -37.52618 -34.56170 -33.60332 -32.86833 -31.00026 -29.29798 -28.69852 -26.17287 -24.90894 -22.22949 -21.50829 -20.60028 -19.71492 -16.83522 -16.54568 -16.17612 -15.59672 -15.13937 -14.60892 -14.39808 -13.97010 -13.39879 -13.25666 -12.93571 -12.67293 -12.58116 -12.51711 -11.82662 -11.71173 -11.68984 -11.46258 -11.16412 -11.00980 -10.81004 -10.59929 -10.56219 -10.37532 -9.88936 -9.39516 -9.13323 -8.46152 -8.29959 -6.10460 -4.11734 0.55189 1.94651 2.69641 3.15857 3.25710 3.34073 3.38026 3.84168 4.39152 4.42645 4.71288 4.90151 5.17001 5.26394 5.28185 5.35359 5.37614 5.51693 5.60166 5.68172 5.76405 5.94135 6.04124 6.21631 6.36898 6.42709 6.76733 6.93089 6.96588 7.17815 7.45661 7.60363 7.66578 7.88612 8.32434 8.94466 9.53253 11.00838 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.005966 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.777011 B = 4692.321749 C = 5572.155893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.084 3.916 3 N -0.283 5.283 4 O 0.016 5.984 5 N -0.260 5.260 6 C 0.084 3.916 7 C 0.121 3.879 8 N -0.680 5.680 9 C 0.085 3.915 10 H 0.045 0.955 11 C -0.139 4.139 12 C -0.116 4.116 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.356 0.644 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 0.251 8.726 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 N -0.029 5.029 4 O -0.124 6.124 5 N -0.004 5.004 6 C -0.099 4.099 7 C -0.010 4.010 8 N -0.317 5.317 9 C -0.024 4.024 10 H 0.063 0.937 11 C -0.197 4.197 12 C -0.154 4.154 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.178 0.822 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.262 1.033 8.684 12.031 hybrid contribution -2.057 -0.291 -0.654 2.178 sum 6.205 0.743 8.030 10.176 Atomic orbital electron populations 1.20651 0.83762 1.06366 1.04696 1.24712 1.00545 0.88937 0.95629 1.79915 0.89060 1.19680 1.14286 1.93367 1.20419 1.13936 1.84675 1.79924 1.17699 0.90849 1.11959 1.24564 0.89735 0.99007 0.96628 1.20596 1.00674 0.86293 0.93413 1.60615 1.56409 1.04733 1.09917 1.21666 0.94712 0.86597 0.99441 0.93720 1.21816 0.98290 0.98159 1.01417 1.21860 0.98272 1.01103 0.94189 1.19149 0.91122 0.94192 0.97278 1.21256 1.07645 1.23719 1.03121 0.92585 1.25000 0.97343 0.95130 0.96847 1.69938 1.21587 1.26860 1.35126 0.86552 0.79614 0.78114 0.83848 1.19725 1.21022 1.21003 0.88635 0.88896 0.88029 0.91512 0.88469 0.82185 0.93642 0.92639 0.92175 0.92281 0.92268 0.96740 0.96813 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.05 36.00 0.36 -0.68 16 2 C 0.08 1.13 7.19 -82.38 -0.59 0.54 16 3 N -0.28 -4.37 12.98 33.74 0.44 -3.93 16 4 O 0.02 0.26 13.71 12.02 0.16 0.43 16 5 N -0.26 -4.10 12.98 33.74 0.44 -3.66 16 6 C 0.08 1.17 6.70 -82.38 -0.55 0.62 16 7 C 0.12 1.49 5.65 -4.98 -0.03 1.46 16 8 N -0.68 -10.12 6.30 -107.99 -0.68 -10.80 16 9 C 0.08 1.28 2.65 -67.71 -0.18 1.10 16 10 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 11 C -0.14 -1.82 9.41 37.16 0.35 -1.47 16 12 C -0.12 -2.17 4.74 -26.73 -0.13 -2.30 16 13 C 0.02 0.46 4.80 -27.88 -0.13 0.32 16 14 C -0.52 -13.84 9.11 -34.44 -0.31 -14.16 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -25.12 13.29 55.43 0.74 -24.38 16 18 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.10 1.17 7.78 -51.93 -0.40 0.76 16 25 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 26 H 0.10 1.11 7.44 -51.93 -0.39 0.72 16 27 H 0.36 5.85 6.46 -39.29 -0.25 5.59 16 28 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.01 0.33 6.42 -51.93 -0.33 -0.01 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -29.26 299.96 -5.78 -35.05 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.07 Total: 0.00 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.31 Total: -13.09 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.93 Total: -42.77 kcal Atomic # 8 Polarization: 0.26 SS G_CDS: 0.16 Total: 0.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.26 -5.78 -35.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.866 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds