Wall clock time and date at job start Sun Mar 29 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29953 * 125.30464 * 2 1 4 4 O 1.41883 * 107.41518 * 179.97438 * 3 2 1 5 5 N 1.41881 * 106.38472 * 359.78822 * 4 3 2 6 6 C 1.29953 * 107.41324 * 0.36195 * 5 4 3 7 7 C 1.50697 * 125.29910 * 179.89581 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.69197 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47018 * 119.99912 * 18 16 14 21 21 H 1.48497 * 109.46891 * 239.99992 * 18 16 14 22 22 H 1.09001 * 109.46871 * 270.00038 * 1 2 3 23 23 H 1.09004 * 109.46892 * 29.99779 * 1 2 3 24 24 H 1.08992 * 109.47272 * 149.99389 * 1 2 3 25 25 H 1.09004 * 109.46763 * 149.69639 * 7 6 5 26 26 H 1.08995 * 109.47483 * 29.69295 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 29 29 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 30 30 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 31 31 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 32 32 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 33 33 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 34 34 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 35 35 H 0.96998 * 119.99555 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0060 6 6 2.3212 -1.1498 0.0005 7 6 1.8209 -2.5713 0.0011 8 7 1.6583 -3.0338 -1.3838 9 6 1.1702 -4.4188 -1.4224 10 1 0.4860 -4.5862 -0.5905 11 6 2.3549 -5.3804 -1.3098 12 6 0.4376 -4.6647 -2.7429 13 6 -0.8174 -3.7914 -2.8001 14 6 -1.5394 -4.0342 -4.1005 15 1 -1.1426 -4.7402 -4.8148 16 6 -2.7066 -3.3547 -4.3782 17 7 -3.1901 -2.4952 -3.5080 18 14 -3.6019 -3.6560 -5.9897 19 1 -2.8577 -4.6624 -6.7888 20 1 -4.9703 -4.1596 -5.7091 21 1 -3.6890 -2.3850 -6.7527 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 0.8607 -2.6183 0.5149 26 1 2.5397 -3.2094 0.5151 27 1 1.0459 -2.4204 -1.9003 28 1 2.8769 -5.2053 -0.3689 29 1 1.9927 -6.4081 -1.3380 30 1 3.0392 -5.2130 -2.1415 31 1 1.0943 -4.4120 -3.5753 32 1 0.1530 -5.7147 -2.8104 33 1 -1.4742 -4.0443 -1.9677 34 1 -0.5329 -2.7414 -2.7326 35 1 -4.0110 -2.0170 -3.7036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:48 Heat of formation + Delta-G solvation = 50.464100 kcal Electronic energy + Delta-G solvation = -16938.581939 eV Core-core repulsion = 14167.434536 eV Total energy + Delta-G solvation = -2771.147403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.55934 -38.76781 -35.85197 -35.06925 -34.34607 -32.44384 -30.72804 -29.69510 -27.41813 -26.55966 -23.43649 -23.04114 -21.68511 -21.07305 -18.50827 -17.90607 -17.32271 -16.87364 -16.52009 -16.36008 -15.47510 -15.11603 -14.46602 -14.37002 -14.31650 -14.23148 -13.99740 -13.54513 -13.15317 -13.03659 -12.89897 -12.85381 -12.76985 -12.37559 -12.32769 -12.05620 -11.77588 -11.67792 -11.55133 -11.25036 -10.90744 -10.48911 -9.45178 -8.16536 -6.23803 -0.58642 0.86550 1.40601 1.43568 1.52682 1.54005 2.05146 2.43825 2.76415 3.17364 3.29812 3.65390 3.88812 4.10492 4.15744 4.36678 4.41669 4.52682 4.55707 4.56467 4.70478 4.84363 5.00743 5.07297 5.07855 5.13390 5.26922 5.49769 5.59639 5.75306 5.82840 5.90480 6.09171 6.28809 6.33519 6.91510 7.44410 8.94210 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.005966 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.777011 B = 4692.321749 C = 5572.155893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.094 3.906 3 N -0.303 5.303 4 O -0.013 6.013 5 N -0.278 5.278 6 C 0.093 3.907 7 C 0.122 3.878 8 N -0.690 5.690 9 C 0.092 3.908 10 H 0.054 0.946 11 C -0.133 4.133 12 C -0.105 4.105 13 C 0.026 3.974 14 C -0.541 4.541 15 H 0.052 0.948 16 C 0.008 3.992 17 N -0.923 5.923 18 Si 0.951 3.049 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.282 1.282 22 H 0.126 0.874 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.345 0.655 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.060 0.940 33 H -0.003 1.003 34 H 0.005 0.995 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 -0.676 9.120 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 N -0.051 5.051 4 O -0.147 6.147 5 N -0.024 5.024 6 C -0.091 4.091 7 C -0.008 4.008 8 N -0.325 5.325 9 C -0.016 4.016 10 H 0.072 0.928 11 C -0.191 4.191 12 C -0.143 4.143 13 C -0.011 4.011 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.777 3.223 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.208 1.208 22 H 0.144 0.856 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.131 0.869 27 H 0.165 0.835 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.016 0.984 34 H 0.023 0.977 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.967 0.108 9.084 12.083 hybrid contribution -2.004 -0.026 -0.771 2.147 sum 5.964 0.081 8.313 10.231 Atomic orbital electron populations 1.20789 0.81765 1.06118 1.06554 1.25144 1.01580 0.88367 0.93807 1.79903 0.88814 1.20499 1.15893 1.93347 1.21344 1.14445 1.85612 1.79895 1.18811 0.90600 1.13105 1.24864 0.89264 0.99782 0.95188 1.20756 1.02240 0.85430 0.92331 1.60637 1.56028 1.04466 1.11394 1.21565 0.95452 0.87227 0.97399 0.92814 1.21765 0.97227 0.98114 1.02000 1.21679 0.96403 1.00087 0.96162 1.19034 0.92432 0.94565 0.95078 1.21705 1.08208 1.23539 1.04481 0.92995 1.25758 0.98260 0.95060 0.99932 1.70025 1.22034 1.27589 1.36664 0.85609 0.78506 0.78022 0.80183 1.19224 1.20495 1.20758 0.85585 0.88729 0.88556 0.89091 0.86914 0.83462 0.91860 0.91489 0.93057 0.93298 0.92103 0.98445 0.97691 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 10.05 71.23 0.72 -1.16 16 2 C 0.09 2.42 7.19 43.49 0.31 2.73 16 3 N -0.30 -9.25 12.98 -47.16 -0.61 -9.86 16 4 O -0.01 -0.43 13.71 70.14 0.96 0.54 16 5 N -0.28 -8.61 12.98 -47.16 -0.61 -9.22 16 6 C 0.09 2.46 6.70 43.49 0.29 2.75 16 7 C 0.12 2.73 5.65 85.56 0.48 3.21 16 8 N -0.69 -19.41 6.30 -495.56 -3.12 -22.54 16 9 C 0.09 2.60 2.65 44.91 0.12 2.72 16 10 H 0.05 1.43 7.80 -2.38 -0.02 1.41 16 11 C -0.13 -3.12 9.41 71.98 0.68 -2.45 16 12 C -0.11 -3.83 4.74 30.60 0.15 -3.69 16 13 C 0.03 1.20 4.80 29.85 0.14 1.35 16 14 C -0.54 -28.82 9.11 25.60 0.23 -28.58 16 15 H 0.05 2.73 7.74 -2.92 -0.02 2.71 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.92 -51.64 13.29 21.45 0.28 -51.35 16 18 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.10 2.07 7.78 -2.39 -0.02 2.06 16 25 H 0.09 1.64 7.69 -2.39 -0.02 1.62 16 26 H 0.11 2.21 7.44 -2.39 -0.02 2.20 16 27 H 0.34 11.06 6.46 -89.69 -0.58 10.48 16 28 H 0.06 1.27 7.45 -2.38 -0.02 1.25 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.00 0.23 6.42 -2.39 -0.02 0.22 16 35 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -62.08 299.96 3.02 -59.07 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.51 Total: 11.06 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.58 Total: -22.21 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.06 Total: -92.97 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: 0.96 Total: 0.54 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -62.08 3.02 -59.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.529 kcal (2) G-P(sol) polarization free energy of solvation -62.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds