Wall clock time and date at job start Sun Mar 29 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30278 * 126.28140 * 2 1 4 4 N 1.28666 * 109.37862 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38253 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28280 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47321 * 89.97341 * 6 5 4 8 8 C 1.46901 * 110.99921 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47321 * 34.99775 * 8 7 6 10 10 C 1.53001 * 109.47082 * 275.00170 * 8 7 6 11 11 C 1.52997 * 109.47135 * 155.00053 * 8 7 6 12 12 C 1.53001 * 109.46842 * 294.99961 * 11 8 7 13 13 C 1.50705 * 109.46839 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99742 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99966 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00064 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00136 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47065 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47370 * 120.00212 * 17 15 13 20 20 H 1.48503 * 109.47058 * 240.00384 * 17 15 13 21 21 O 1.34355 * 126.28342 * 179.68745 * 2 1 3 22 22 H 1.09002 * 109.47152 * 90.02383 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02484 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02464 * 1 2 3 25 25 H 1.08994 * 109.46894 * 209.97593 * 6 5 4 26 26 H 1.09001 * 109.46804 * 329.96923 * 6 5 4 27 27 H 1.00904 * 110.99723 * 303.95174 * 7 6 5 28 28 H 1.09001 * 109.47177 * 59.99600 * 10 8 7 29 29 H 1.08996 * 109.46969 * 180.02562 * 10 8 7 30 30 H 1.09007 * 109.46931 * 300.00188 * 10 8 7 31 31 H 1.08999 * 109.46971 * 54.99853 * 11 8 7 32 32 H 1.09001 * 109.47133 * 174.99765 * 11 8 7 33 33 H 1.08999 * 109.47249 * 299.99721 * 12 11 8 34 34 H 1.08998 * 109.47554 * 60.00488 * 12 11 8 35 35 H 0.97003 * 120.00183 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0014 7 7 5.2236 -1.7360 1.3867 8 6 6.4442 -2.5524 1.4268 9 1 7.0931 -2.2770 0.5954 10 6 6.0719 -4.0322 1.3145 11 6 7.1770 -2.3097 2.7478 12 6 7.6586 -0.8586 2.8046 13 6 8.3798 -0.6194 4.1061 14 1 8.4845 -1.4222 4.8209 15 6 8.9068 0.6240 4.3837 16 7 8.7798 1.6014 3.5131 17 14 9.8014 0.9204 5.9966 18 1 9.8082 -0.3310 6.7961 19 1 11.1994 1.3368 5.7180 20 1 9.1084 1.9909 6.7576 21 8 2.3021 -1.0830 0.0059 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5142 25 1 4.6248 -2.4055 -0.5124 26 1 5.6150 -0.9265 -0.5121 27 1 5.3460 -0.8776 1.9029 28 1 5.5498 -4.2051 0.3734 29 1 6.9775 -4.6380 1.3447 30 1 5.4229 -4.3077 2.1459 31 1 6.4989 -2.5004 3.5797 32 1 8.0338 -2.9800 2.8164 33 1 8.3366 -0.6680 1.9727 34 1 6.8018 -0.1884 2.7360 35 1 9.1502 2.4764 3.7085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:41 Heat of formation + Delta-G solvation = 21.155847 kcal Electronic energy + Delta-G solvation = -16690.566796 eV Core-core repulsion = 13918.148492 eV Total energy + Delta-G solvation = -2772.418304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.14223 -37.47522 -36.08293 -33.88473 -32.88824 -31.53194 -29.41475 -28.27678 -25.86690 -24.80424 -22.64186 -22.12781 -21.40981 -19.70127 -17.38742 -17.17696 -16.39759 -15.48962 -15.29766 -15.02102 -14.52384 -14.26125 -13.47192 -13.19442 -12.94327 -12.68867 -12.53447 -12.41801 -12.29500 -11.78543 -11.73143 -11.51550 -11.18855 -10.94336 -10.82996 -10.51012 -10.39413 -9.82267 -9.50269 -9.30533 -9.04443 -8.38744 -8.26724 -5.99425 -4.02379 1.16776 2.27280 2.44188 3.32058 3.39661 3.43462 3.79115 4.31831 4.46622 4.57258 4.77903 5.02646 5.13672 5.23176 5.35758 5.38190 5.41876 5.53428 5.62355 5.67768 5.72908 5.78786 6.05130 6.23716 6.41933 6.42900 6.81363 7.00724 7.20873 7.52151 7.68364 7.76942 7.98434 8.37507 8.41328 9.04361 9.62192 11.11639 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.005161 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.262805 B = 5423.599063 C = 6218.393632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.151 3.849 3 N -0.289 5.289 4 N -0.279 5.279 5 C 0.178 3.822 6 C 0.152 3.848 7 N -0.684 5.684 8 C 0.084 3.916 9 H 0.046 0.954 10 C -0.138 4.138 11 C -0.115 4.115 12 C 0.018 3.982 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.220 6.220 22 H 0.096 0.904 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.362 0.638 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.765 -7.978 -8.733 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 N -0.136 5.136 4 N -0.126 5.126 5 C -0.033 4.033 6 C 0.021 3.979 7 N -0.322 5.322 8 C -0.025 4.025 9 H 0.064 0.936 10 C -0.196 4.196 11 C -0.152 4.152 12 C -0.019 4.019 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 O -0.099 6.099 22 H 0.114 0.886 23 H 0.123 0.877 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.185 0.815 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.761 -7.098 -8.683 17.752 hybrid contribution 0.794 -0.181 0.633 1.032 sum -12.967 -7.279 -8.049 16.909 Atomic orbital electron populations 1.20304 0.80413 1.05630 1.04925 1.27991 0.97842 0.79938 1.00243 1.74404 0.96179 1.25729 1.17333 1.74479 1.12000 1.09298 1.16782 1.28012 0.85149 0.91368 0.98818 1.20390 0.86502 0.97087 0.93876 1.60684 1.36535 1.25228 1.09709 1.21672 0.88519 0.92615 0.99695 0.93609 1.21824 1.01004 0.95521 1.01289 1.21847 0.98406 1.00983 0.94013 1.19159 0.95978 0.89507 0.97283 1.21237 1.35409 0.96244 1.03057 0.92595 1.25030 0.96295 0.96259 0.96830 1.69970 1.45805 1.02343 1.35065 0.86552 0.79451 0.78208 0.83894 1.19738 1.21031 1.21003 1.84775 1.17616 1.38130 1.69385 0.88576 0.87661 0.88979 0.88164 0.90026 0.81519 0.93676 0.92546 0.92201 0.92328 0.92244 0.96743 0.96644 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.15 1.98 8.48 -12.94 -0.11 1.88 16 3 N -0.29 -4.85 12.22 32.55 0.40 -4.45 16 4 N -0.28 -5.10 12.22 32.55 0.40 -4.70 16 5 C 0.18 2.82 7.99 -12.94 -0.10 2.71 16 6 C 0.15 2.14 6.11 -4.97 -0.03 2.11 16 7 N -0.68 -11.28 6.30 -107.99 -0.68 -11.96 16 8 C 0.08 1.36 2.65 -67.71 -0.18 1.18 16 9 H 0.05 0.74 7.80 -51.93 -0.40 0.34 16 10 C -0.14 -1.84 9.41 37.16 0.35 -1.49 16 11 C -0.11 -2.28 4.74 -26.73 -0.13 -2.41 16 12 C 0.02 0.45 4.80 -27.88 -0.13 0.32 16 13 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 O -0.22 -3.17 10.87 5.41 0.06 -3.11 16 22 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.10 1.15 7.44 -51.93 -0.39 0.76 16 26 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 27 H 0.36 6.98 6.46 -39.29 -0.25 6.72 16 28 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -33.07 299.85 -5.06 -38.14 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.11 Total: 0.31 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.37 Total: -9.21 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.85 Total: -47.49 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.06 Total: -3.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.07 -5.06 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.293 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds