Wall clock time and date at job start Sun Mar 29 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30278 * 126.28140 * 2 1 4 4 N 1.28666 * 109.37862 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38253 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28280 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47321 * 89.97341 * 6 5 4 8 8 C 1.46901 * 110.99921 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47321 * 34.99775 * 8 7 6 10 10 C 1.53001 * 109.47082 * 275.00170 * 8 7 6 11 11 C 1.52997 * 109.47135 * 155.00053 * 8 7 6 12 12 C 1.53001 * 109.46842 * 294.99961 * 11 8 7 13 13 C 1.50705 * 109.46839 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99742 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99966 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00064 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00136 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47065 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47370 * 120.00212 * 17 15 13 20 20 H 1.48503 * 109.47058 * 240.00384 * 17 15 13 21 21 O 1.34355 * 126.28342 * 179.68745 * 2 1 3 22 22 H 1.09002 * 109.47152 * 90.02383 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02484 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02464 * 1 2 3 25 25 H 1.08994 * 109.46894 * 209.97593 * 6 5 4 26 26 H 1.09001 * 109.46804 * 329.96923 * 6 5 4 27 27 H 1.00904 * 110.99723 * 303.95174 * 7 6 5 28 28 H 1.09001 * 109.47177 * 59.99600 * 10 8 7 29 29 H 1.08996 * 109.46969 * 180.02562 * 10 8 7 30 30 H 1.09007 * 109.46931 * 300.00188 * 10 8 7 31 31 H 1.08999 * 109.46971 * 54.99853 * 11 8 7 32 32 H 1.09001 * 109.47133 * 174.99765 * 11 8 7 33 33 H 1.08999 * 109.47249 * 299.99721 * 12 11 8 34 34 H 1.08998 * 109.47554 * 60.00488 * 12 11 8 35 35 H 0.97003 * 120.00183 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0014 7 7 5.2236 -1.7360 1.3867 8 6 6.4442 -2.5524 1.4268 9 1 7.0931 -2.2770 0.5954 10 6 6.0719 -4.0322 1.3145 11 6 7.1770 -2.3097 2.7478 12 6 7.6586 -0.8586 2.8046 13 6 8.3798 -0.6194 4.1061 14 1 8.4845 -1.4222 4.8209 15 6 8.9068 0.6240 4.3837 16 7 8.7798 1.6014 3.5131 17 14 9.8014 0.9204 5.9966 18 1 9.8082 -0.3310 6.7961 19 1 11.1994 1.3368 5.7180 20 1 9.1084 1.9909 6.7576 21 8 2.3021 -1.0830 0.0059 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5142 25 1 4.6248 -2.4055 -0.5124 26 1 5.6150 -0.9265 -0.5121 27 1 5.3460 -0.8776 1.9029 28 1 5.5498 -4.2051 0.3734 29 1 6.9775 -4.6380 1.3447 30 1 5.4229 -4.3077 2.1459 31 1 6.4989 -2.5004 3.5797 32 1 8.0338 -2.9800 2.8164 33 1 8.3366 -0.6680 1.9727 34 1 6.8018 -0.1884 2.7360 35 1 9.1502 2.4764 3.7085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:41 Heat of formation + Delta-G solvation = -6.253545 kcal Electronic energy + Delta-G solvation = -16691.755356 eV Core-core repulsion = 13918.148492 eV Total energy + Delta-G solvation = -2773.606865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.28947 -38.83098 -37.25483 -35.55046 -34.41687 -32.84653 -31.01058 -29.28809 -27.29128 -26.47527 -23.73686 -23.42283 -23.02253 -21.16810 -18.65521 -18.54058 -18.16644 -16.80417 -16.64908 -16.51607 -16.09149 -15.37877 -14.50315 -14.38028 -14.34063 -14.00199 -13.80622 -13.51944 -13.48418 -13.17869 -13.08633 -12.95148 -12.87057 -12.60000 -12.33983 -11.99995 -11.93575 -11.62473 -11.32429 -10.98871 -10.62398 -10.56566 -9.58534 -8.20747 -6.31836 0.06848 1.21025 1.28170 1.38453 1.39040 1.52146 2.39989 2.77105 3.12036 3.20871 3.45247 3.80252 4.03793 4.11278 4.32425 4.36590 4.41808 4.46993 4.56860 4.58756 4.72701 4.78163 4.97212 5.04081 5.05399 5.07487 5.19667 5.46605 5.53070 5.65102 5.83803 5.99574 6.11026 6.24541 6.85879 7.21433 7.37834 8.90704 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.005161 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.262805 B = 5423.599063 C = 6218.393632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.170 3.830 3 N -0.335 5.335 4 N -0.323 5.323 5 C 0.175 3.825 6 C 0.155 3.845 7 N -0.687 5.687 8 C 0.088 3.912 9 H 0.046 0.954 10 C -0.130 4.130 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.542 4.542 14 H 0.060 0.940 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.281 1.281 21 O -0.221 6.221 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.080 0.920 27 H 0.341 0.659 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.066 0.934 33 H -0.011 1.011 34 H -0.008 1.008 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 -9.801 -8.595 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.042 4.042 3 N -0.182 5.182 4 N -0.169 5.169 5 C -0.038 4.038 6 C 0.025 3.975 7 N -0.322 5.322 8 C -0.020 4.020 9 H 0.064 0.936 10 C -0.187 4.187 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.184 1.184 19 H -0.203 1.203 20 H -0.207 1.207 21 O -0.100 6.100 22 H 0.142 0.858 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.153 0.847 26 H 0.098 0.902 27 H 0.161 0.839 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.007 0.993 34 H 0.010 0.990 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.792 -8.937 -8.554 19.284 hybrid contribution 1.018 0.392 0.557 1.225 sum -13.774 -8.545 -7.997 18.075 Atomic orbital electron populations 1.20745 0.75991 1.07312 1.07186 1.29222 0.99644 0.78765 0.96527 1.74321 0.96177 1.27484 1.20191 1.74387 1.13368 1.10867 1.18288 1.28183 0.86079 0.90941 0.98580 1.20530 0.85856 0.98469 0.92679 1.60768 1.36413 1.24065 1.10982 1.21635 0.88266 0.94806 0.97334 0.93558 1.21752 1.01842 0.92694 1.02443 1.21660 0.98894 0.97203 0.96259 1.19045 0.94336 0.92762 0.95268 1.21730 1.35481 0.96556 1.04212 0.92150 1.25975 0.97209 0.96046 1.00625 1.70109 1.47035 1.02859 1.37301 0.85430 0.78104 0.78428 0.79283 1.18399 1.20335 1.20688 1.84795 1.17214 1.38438 1.69570 0.85757 0.86530 0.86600 0.84744 0.90229 0.83917 0.91336 0.91251 0.92473 0.92769 0.91503 0.99275 0.98955 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.17 4.27 8.48 88.34 0.75 5.02 16 3 N -0.34 -11.42 12.22 -165.50 -2.02 -13.44 16 4 N -0.32 -12.19 12.22 -165.50 -2.02 -14.21 16 5 C 0.17 5.53 7.99 88.34 0.71 6.24 16 6 C 0.15 4.25 6.11 85.56 0.52 4.77 16 7 N -0.69 -22.52 6.30 -495.58 -3.12 -25.64 16 8 C 0.09 2.78 2.65 44.91 0.12 2.90 16 9 H 0.05 1.46 7.80 -2.39 -0.02 1.44 16 10 C -0.13 -3.08 9.41 71.98 0.68 -2.40 16 11 C -0.10 -4.07 4.74 30.59 0.15 -3.92 16 12 C 0.02 1.21 4.80 29.85 0.14 1.35 16 13 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 17 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 O -0.22 -6.11 10.87 -3.56 -0.04 -6.15 16 22 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.13 2.72 7.44 -2.39 -0.02 2.71 16 26 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 27 H 0.34 13.67 6.46 -89.69 -0.58 13.09 16 28 H 0.07 1.33 7.45 -2.39 -0.02 1.31 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H -0.01 -0.44 6.43 -2.39 -0.02 -0.45 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.94 299.85 0.12 -73.82 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.50 Total: 12.66 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 4.51 Total: -16.37 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -6.88 Total: -111.13 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.04 Total: -6.15 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.94 0.12 -73.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.570 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds