Wall clock time and date at job start Sun Mar 29 2020 22:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.53003 * 109.47181 * 119.99703 * 2 1 3 5 5 C 1.52994 * 109.47362 * 186.45347 * 4 2 1 6 6 C 1.50701 * 109.47362 * 173.73094 * 5 4 2 7 7 H 1.08005 * 119.99882 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00371 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99869 * 359.72673 * 8 6 5 10 10 Si 1.86797 * 119.99866 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46754 * 179.72492 * 10 8 6 12 12 H 1.48501 * 109.47195 * 299.72444 * 10 8 6 13 13 H 1.48498 * 109.47432 * 59.72694 * 10 8 6 14 14 N 1.46901 * 109.47393 * 239.99417 * 2 1 3 15 15 C 1.48435 * 110.99586 * 40.04552 * 14 2 1 16 16 C 1.56177 * 104.48780 * 121.95887 * 15 14 2 17 17 H 1.08995 * 116.51622 * 161.89387 * 16 15 14 18 18 C 1.57278 * 99.52930 * 34.50116 * 16 15 14 19 19 C 1.49832 * 110.99990 * 156.97707 * 14 2 1 20 20 H 1.09003 * 116.31487 * 74.07188 * 19 14 2 21 21 C 1.53562 * 103.92110 * 304.71519 * 19 14 2 22 22 O 1.20826 * 126.32989 * 108.88041 * 21 19 14 23 23 O 1.35134 * 107.33235 * 288.88926 * 21 19 14 24 24 H 1.09002 * 109.47193 * 291.93605 * 1 2 3 25 25 H 1.09003 * 109.47169 * 51.93786 * 1 2 3 26 26 H 1.09006 * 109.46879 * 171.93457 * 1 2 3 27 27 H 1.09002 * 109.46765 * 66.45065 * 4 2 1 28 28 H 1.09000 * 109.47390 * 306.45731 * 4 2 1 29 29 H 1.09001 * 109.47383 * 53.73153 * 5 4 2 30 30 H 1.08999 * 109.47666 * 293.73201 * 5 4 2 31 31 H 0.97008 * 119.99984 * 0.27228 * 9 8 6 32 32 H 1.09000 * 110.43260 * 240.70782 * 15 14 2 33 33 H 1.09005 * 110.43400 * 3.20822 * 15 14 2 34 34 H 1.09001 * 112.63105 * 189.97157 * 18 16 15 35 35 H 1.09002 * 112.62998 * 61.80351 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5613 -0.5823 1.3330 6 6 4.0472 -1.1576 2.6385 7 1 3.3414 -1.5796 3.3386 8 6 5.3927 -1.1441 2.9395 9 7 6.2526 -0.6342 2.0851 10 14 5.9949 -1.8578 4.5573 11 1 7.4722 -1.7284 4.6360 12 1 5.3725 -1.1202 5.6860 13 1 5.6188 -3.2922 4.6362 14 7 2.0197 -0.6926 -1.1994 15 6 1.1968 -0.3481 -2.3857 16 6 2.2145 0.2552 -3.4053 17 1 1.8939 0.2965 -4.4462 18 6 3.4740 -0.6241 -3.0672 19 6 3.4124 -0.2574 -1.5397 20 1 4.2080 -0.6393 -0.8998 21 6 3.3039 1.2699 -1.6575 22 8 3.7536 2.0813 -0.8834 23 8 2.6121 1.5383 -2.7869 24 1 -0.3634 0.3839 0.9533 25 1 -0.3634 0.6336 -0.8091 26 1 -0.3633 -1.0176 -0.1442 27 1 1.7739 -1.7768 1.1934 28 1 1.5854 -0.2784 2.1355 29 1 3.8336 0.4716 1.2767 30 1 4.0215 -1.1212 0.5049 31 1 5.9398 -0.2640 1.2448 32 1 0.7303 -1.2428 -2.7980 33 1 0.4393 0.3901 -2.1221 34 1 4.3812 -0.2603 -3.5497 35 1 3.3062 -1.6853 -3.2509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:51 Heat of formation + Delta-G solvation = -45.845372 kcal Electronic energy + Delta-G solvation = -18240.166462 eV Core-core repulsion = 15432.550016 eV Total energy + Delta-G solvation = -2807.616446 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.05576 -37.67210 -36.90220 -33.97538 -32.84235 -30.27110 -28.98251 -28.03545 -24.86117 -23.32444 -22.11299 -21.84387 -20.22961 -19.06826 -17.43148 -17.37009 -16.49370 -16.15537 -15.47243 -14.47826 -14.01698 -13.65782 -13.51016 -13.28988 -12.88697 -12.60376 -12.50438 -12.29770 -12.00084 -11.71646 -11.58994 -11.34924 -11.09622 -10.77278 -10.62694 -10.47758 -10.12976 -10.05144 -9.73991 -9.47035 -8.47034 -8.23081 -8.17708 -6.26791 -3.94647 2.27618 3.00803 3.48492 3.51029 3.68453 3.69526 3.92493 4.04699 4.28895 4.48639 4.61610 5.09203 5.16152 5.21284 5.32580 5.49656 5.50145 5.56274 5.59965 5.64777 5.88747 5.97712 6.09860 6.20125 6.34753 6.55424 6.60388 6.82078 7.02407 7.10279 7.50432 7.64824 7.72165 8.32261 8.56042 8.98317 9.76607 11.13703 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.007482 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.747718 B = 3741.557943 C = 4121.490699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 H 0.047 0.953 4 C -0.090 4.090 5 C 0.002 3.998 6 C -0.600 4.600 7 H 0.046 0.954 8 C 0.014 3.986 9 N -0.913 5.913 10 Si 1.068 2.932 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.289 1.289 14 N -0.484 5.484 15 C -0.011 4.011 16 C 0.056 3.944 17 H 0.157 0.843 18 C -0.153 4.153 19 C 0.007 3.993 20 H 0.171 0.829 21 C 0.445 3.555 22 O -0.436 6.436 23 O -0.356 6.356 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.010 0.990 30 H 0.016 0.984 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 -1.084 -12.567 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.053 4.053 3 H 0.065 0.935 4 C -0.128 4.128 5 C -0.034 4.034 6 C -0.638 4.638 7 H 0.064 0.936 8 C -0.190 4.190 9 N -0.549 5.549 10 Si 0.896 3.104 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.215 1.215 14 N -0.210 5.210 15 C -0.139 4.139 16 C 0.000 4.000 17 H 0.175 0.825 18 C -0.190 4.190 19 C -0.101 4.101 20 H 0.188 0.812 21 C 0.282 3.718 22 O -0.316 6.316 23 O -0.273 6.273 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.910 -1.293 -11.219 14.385 hybrid contribution -1.455 1.126 -0.999 2.093 sum -10.365 -0.168 -12.218 16.023 Atomic orbital electron populations 1.22080 0.94835 1.02179 1.01749 1.22296 0.94740 0.96584 0.91667 0.93510 1.21508 0.99382 0.99203 0.92708 1.19501 0.90279 0.96398 0.97269 1.22068 0.94915 1.42905 1.03959 0.93558 1.25808 0.93440 0.95892 1.03858 1.70775 1.37049 1.37120 1.09956 0.83568 0.76141 0.75939 0.74731 1.20829 1.21587 1.21537 1.65448 0.99838 1.53435 1.02316 1.24374 0.96620 1.01598 0.91265 1.26118 0.95971 0.79456 0.98445 0.82526 1.24479 0.97870 1.02535 0.94131 1.26052 0.95935 0.89999 0.98117 0.81170 1.24761 0.75087 0.93090 0.78877 1.90765 1.43362 1.57072 1.40355 1.87661 1.67104 1.34505 1.38065 0.91643 0.92953 0.91545 0.92228 0.92632 0.97157 0.96581 0.92143 0.87976 0.89808 0.88570 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.38 37.15 0.31 -1.79 16 2 C 0.05 0.98 2.19 -67.71 -0.15 0.83 16 3 H 0.05 0.96 5.62 -51.93 -0.29 0.67 16 4 C -0.09 -1.93 4.82 -26.73 -0.13 -2.06 16 5 C 0.00 0.05 3.19 -27.89 -0.09 -0.04 16 6 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 7 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 9 N -0.91 -28.66 13.65 55.43 0.76 -27.90 16 10 Si 1.07 26.05 29.90 -169.99 -5.08 20.97 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 N -0.48 -7.64 5.13 -209.98 -1.08 -8.71 16 15 C -0.01 -0.12 5.66 -1.27 -0.01 -0.13 16 16 C 0.06 0.59 6.11 -22.70 -0.14 0.45 16 17 H 0.16 1.00 8.14 -51.93 -0.42 0.57 16 18 C -0.15 -1.75 6.96 -22.11 -0.15 -1.91 16 19 C 0.01 0.13 4.11 -63.49 -0.26 -0.13 16 20 H 0.17 3.40 5.22 -51.93 -0.27 3.13 16 21 C 0.44 8.41 6.03 37.45 0.23 8.64 16 22 O -0.44 -10.15 17.30 -18.25 -0.32 -10.46 16 23 O -0.36 -5.61 10.92 -41.30 -0.45 -6.06 16 24 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 25 H 0.05 0.64 5.99 -51.93 -0.31 0.32 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 29 H 0.01 0.29 7.90 -51.93 -0.41 -0.12 16 30 H 0.02 0.43 4.96 -51.93 -0.26 0.17 16 31 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.97 5.15 -51.93 -0.27 0.71 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -34.62 275.13 -7.51 -42.13 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.69 Total: -0.35 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.80 Total: -13.76 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.32 Total: -36.61 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.77 Total: -16.52 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.62 -7.51 -42.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.717 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds