Wall clock time and date at job start Sun Mar 29 2020 22:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.53003 * 109.47181 * 119.99703 * 2 1 3 5 5 C 1.52994 * 109.47362 * 186.45347 * 4 2 1 6 6 C 1.50701 * 109.47362 * 173.73094 * 5 4 2 7 7 H 1.08005 * 119.99882 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00371 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99869 * 359.72673 * 8 6 5 10 10 Si 1.86797 * 119.99866 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46754 * 179.72492 * 10 8 6 12 12 H 1.48501 * 109.47195 * 299.72444 * 10 8 6 13 13 H 1.48498 * 109.47432 * 59.72694 * 10 8 6 14 14 N 1.46901 * 109.47393 * 239.99417 * 2 1 3 15 15 C 1.48435 * 110.99586 * 40.04552 * 14 2 1 16 16 C 1.56177 * 104.48780 * 121.95887 * 15 14 2 17 17 H 1.08995 * 116.51622 * 161.89387 * 16 15 14 18 18 C 1.57278 * 99.52930 * 34.50116 * 16 15 14 19 19 C 1.49832 * 110.99990 * 156.97707 * 14 2 1 20 20 H 1.09003 * 116.31487 * 74.07188 * 19 14 2 21 21 C 1.53562 * 103.92110 * 304.71519 * 19 14 2 22 22 O 1.20826 * 126.32989 * 108.88041 * 21 19 14 23 23 O 1.35134 * 107.33235 * 288.88926 * 21 19 14 24 24 H 1.09002 * 109.47193 * 291.93605 * 1 2 3 25 25 H 1.09003 * 109.47169 * 51.93786 * 1 2 3 26 26 H 1.09006 * 109.46879 * 171.93457 * 1 2 3 27 27 H 1.09002 * 109.46765 * 66.45065 * 4 2 1 28 28 H 1.09000 * 109.47390 * 306.45731 * 4 2 1 29 29 H 1.09001 * 109.47383 * 53.73153 * 5 4 2 30 30 H 1.08999 * 109.47666 * 293.73201 * 5 4 2 31 31 H 0.97008 * 119.99984 * 0.27228 * 9 8 6 32 32 H 1.09000 * 110.43260 * 240.70782 * 15 14 2 33 33 H 1.09005 * 110.43400 * 3.20822 * 15 14 2 34 34 H 1.09001 * 112.63105 * 189.97157 * 18 16 15 35 35 H 1.09002 * 112.62998 * 61.80351 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5613 -0.5823 1.3330 6 6 4.0472 -1.1576 2.6385 7 1 3.3414 -1.5796 3.3386 8 6 5.3927 -1.1441 2.9395 9 7 6.2526 -0.6342 2.0851 10 14 5.9949 -1.8578 4.5573 11 1 7.4722 -1.7284 4.6360 12 1 5.3725 -1.1202 5.6860 13 1 5.6188 -3.2922 4.6362 14 7 2.0197 -0.6926 -1.1994 15 6 1.1968 -0.3481 -2.3857 16 6 2.2145 0.2552 -3.4053 17 1 1.8939 0.2965 -4.4462 18 6 3.4740 -0.6241 -3.0672 19 6 3.4124 -0.2574 -1.5397 20 1 4.2080 -0.6393 -0.8998 21 6 3.3039 1.2699 -1.6575 22 8 3.7536 2.0813 -0.8834 23 8 2.6121 1.5383 -2.7869 24 1 -0.3634 0.3839 0.9533 25 1 -0.3634 0.6336 -0.8091 26 1 -0.3633 -1.0176 -0.1442 27 1 1.7739 -1.7768 1.1934 28 1 1.5854 -0.2784 2.1355 29 1 3.8336 0.4716 1.2767 30 1 4.0215 -1.1212 0.5049 31 1 5.9398 -0.2640 1.2448 32 1 0.7303 -1.2428 -2.7980 33 1 0.4393 0.3901 -2.1221 34 1 4.3812 -0.2603 -3.5497 35 1 3.3062 -1.6853 -3.2509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:51 Heat of formation + Delta-G solvation = -71.185897 kcal Electronic energy + Delta-G solvation = -18241.265309 eV Core-core repulsion = 15432.550016 eV Total energy + Delta-G solvation = -2808.715294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.28654 -39.19454 -38.32555 -35.84593 -34.44489 -31.95012 -30.16142 -29.31602 -26.72906 -24.81842 -23.60527 -23.21219 -21.82294 -20.29764 -18.95857 -18.71734 -18.37788 -17.58685 -16.81350 -15.88898 -15.61990 -15.34866 -14.96491 -14.68404 -14.39741 -14.28584 -13.85377 -13.77249 -13.38597 -12.89680 -12.82743 -12.69241 -12.57908 -12.47859 -12.25167 -11.96863 -11.79077 -11.61965 -11.50160 -11.28523 -10.59561 -10.49655 -9.52786 -8.68143 -6.37551 0.83239 1.49516 1.59231 1.78382 1.86050 2.44962 2.56483 2.73785 3.02895 3.16384 3.23284 3.59416 3.82052 3.93774 4.10448 4.21873 4.41569 4.51708 4.60119 4.61113 4.72197 4.76265 4.79641 4.85063 4.95141 5.08189 5.10053 5.30194 5.41620 5.44521 5.62869 5.78018 6.01776 6.19345 6.26036 6.58972 7.44476 8.71770 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.007482 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.747718 B = 3741.557943 C = 4121.490699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 H 0.012 0.988 4 C -0.082 4.082 5 C 0.011 3.989 6 C -0.621 4.621 7 H 0.048 0.952 8 C -0.042 4.042 9 N -0.936 5.936 10 Si 1.118 2.882 11 H -0.283 1.283 12 H -0.273 1.273 13 H -0.264 1.264 14 N -0.487 5.487 15 C -0.015 4.015 16 C 0.069 3.931 17 H 0.216 0.784 18 C -0.136 4.136 19 C -0.010 4.010 20 H 0.127 0.873 21 C 0.445 3.555 22 O -0.501 6.501 23 O -0.363 6.363 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.047 0.953 29 H -0.031 1.031 30 H 0.013 0.987 31 H 0.252 0.748 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 -2.843 -14.290 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.030 0.970 4 C -0.120 4.120 5 C -0.025 4.025 6 C -0.659 4.659 7 H 0.067 0.933 8 C -0.239 4.239 9 N -0.573 5.573 10 Si 0.939 3.061 11 H -0.208 1.208 12 H -0.198 1.198 13 H -0.189 1.189 14 N -0.213 5.213 15 C -0.141 4.141 16 C 0.015 3.985 17 H 0.233 0.767 18 C -0.173 4.173 19 C -0.119 4.119 20 H 0.144 0.856 21 C 0.285 3.715 22 O -0.386 6.386 23 O -0.280 6.280 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.065 0.935 29 H -0.013 1.013 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.074 -3.074 -12.997 17.349 hybrid contribution -0.837 1.655 -0.543 1.933 sum -11.911 -1.419 -13.539 18.089 Atomic orbital electron populations 1.22020 0.91140 1.03877 1.02828 1.22101 0.97498 0.94051 0.91272 0.97041 1.21358 0.95835 0.99939 0.94858 1.19358 0.93796 0.93345 0.96049 1.22570 0.95409 1.42733 1.05213 0.93344 1.27491 0.94151 0.95470 1.06782 1.70910 1.37531 1.38799 1.10072 0.82940 0.75693 0.76698 0.70770 1.20814 1.19809 1.18881 1.65423 0.99685 1.52822 1.03412 1.24664 0.96177 1.03736 0.89554 1.26796 0.94616 0.76531 1.00519 0.76716 1.24561 0.99128 1.04540 0.89082 1.25857 0.95831 0.88614 1.01578 0.85589 1.25132 0.74108 0.93468 0.78766 1.90712 1.46260 1.58718 1.42884 1.87642 1.66001 1.37759 1.36597 0.91702 0.90566 0.89729 0.91665 0.93475 1.01307 0.96927 0.93840 0.83796 0.89419 0.87633 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.38 71.98 0.60 -3.01 16 2 C 0.06 2.12 2.19 44.91 0.10 2.22 16 3 H 0.01 0.50 5.62 -2.39 -0.01 0.49 16 4 C -0.08 -3.62 4.82 30.59 0.15 -3.47 16 5 C 0.01 0.62 3.19 29.85 0.10 0.71 16 6 C -0.62 -37.74 9.11 25.60 0.23 -37.51 16 7 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 8 C -0.04 -2.57 5.46 84.66 0.46 -2.11 16 9 N -0.94 -61.36 13.65 21.45 0.29 -61.07 16 10 Si 1.12 52.74 29.90 68.60 2.05 54.79 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 14 N -0.49 -14.75 5.13 -818.23 -4.20 -18.94 16 15 C -0.01 -0.28 5.66 87.11 0.49 0.22 16 16 C 0.07 1.15 6.11 33.20 0.20 1.35 16 17 H 0.22 1.18 8.14 -2.39 -0.02 1.16 16 18 C -0.14 -2.75 6.96 33.58 0.23 -2.51 16 19 C -0.01 -0.33 4.11 46.01 0.19 -0.14 16 20 H 0.13 5.50 5.22 -2.39 -0.01 5.49 16 21 C 0.45 17.58 6.03 72.17 0.43 18.01 16 22 O -0.50 -25.42 17.30 21.49 0.37 -25.05 16 23 O -0.36 -10.97 10.92 -60.97 -0.67 -11.63 16 24 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 25 H 0.08 1.60 5.99 -2.39 -0.01 1.58 16 26 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 27 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.05 2.10 8.11 -2.39 -0.02 2.08 16 29 H -0.03 -1.99 7.90 -2.39 -0.02 -2.01 16 30 H 0.01 0.72 4.96 -2.39 -0.01 0.71 16 31 H 0.25 16.96 7.22 -92.70 -0.67 16.29 16 32 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.65 5.15 -2.38 -0.01 1.64 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -82.72 275.13 2.24 -80.48 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.19 Total: 7.66 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.19 Total: -26.24 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -3.90 Total: -80.01 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.29 Total: -36.69 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -82.72 2.24 -80.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.296 kcal (2) G-P(sol) polarization free energy of solvation -82.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds