Wall clock time and date at job start Sun Mar 29 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37094 * 119.99853 * 2 1 4 4 H 1.08000 * 119.99283 * 201.70377 * 3 2 1 5 5 C 1.38942 * 120.00462 * 21.69866 * 3 2 1 6 6 N 1.31414 * 119.99652 * 14.84268 * 5 3 2 7 7 Si 1.86796 * 120.00514 * 194.84272 * 5 3 2 8 8 H 1.48497 * 109.47369 * 89.99923 * 7 5 3 9 9 H 1.48498 * 109.47674 * 210.00289 * 7 5 3 10 10 H 1.48504 * 109.46696 * 330.00186 * 7 5 3 11 11 C 1.34777 * 119.99710 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99993 * 180.02562 * 11 2 1 13 13 C 1.50704 * 120.00061 * 359.97438 * 11 2 1 14 14 H 1.08994 * 115.55696 * 325.70355 * 13 11 2 15 15 C 1.53062 * 117.50153 * 111.44491 * 13 11 2 16 16 C 1.52729 * 117.50102 * 180.02562 * 13 11 2 17 17 C 1.53275 * 117.79953 * 144.81695 * 16 13 11 18 18 C 1.53391 * 108.35859 * 163.61321 * 17 16 13 19 19 C 1.53050 * 109.07872 * 53.63057 * 18 17 16 20 20 O 1.42852 * 109.84065 * 299.23256 * 19 18 17 21 21 C 1.43120 * 114.07798 * 64.23432 * 20 19 18 22 22 H 1.08997 * 109.47093 * 270.60400 * 1 2 3 23 23 H 1.08995 * 109.46961 * 30.60322 * 1 2 3 24 24 H 1.09002 * 109.46948 * 150.60847 * 1 2 3 25 25 H 0.97008 * 119.99642 * 179.97438 * 6 5 3 26 26 H 1.09005 * 117.50713 * 0.02562 * 15 13 11 27 27 H 1.08997 * 117.51031 * 214.93697 * 15 13 11 28 28 H 1.08993 * 109.68709 * 283.33337 * 17 16 13 29 29 H 1.09003 * 109.68474 * 43.85798 * 17 16 13 30 30 H 1.08995 * 109.54143 * 173.51522 * 18 17 16 31 31 H 1.09013 * 109.53563 * 293.67233 * 18 17 16 32 32 H 1.08999 * 109.40992 * 179.12327 * 19 18 17 33 33 H 1.09000 * 109.41238 * 59.34355 * 19 18 17 34 34 H 1.09005 * 109.59716 * 62.36650 * 21 20 19 35 35 H 1.09005 * 109.58940 * 182.80969 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2203 -0.3459 5 6 1.5297 2.3480 0.4449 6 7 0.4105 2.2734 1.1295 7 14 2.2859 4.0144 0.0698 8 1 1.7534 4.5205 -1.2207 9 1 1.9438 4.9688 1.1548 10 1 3.7618 3.8786 -0.0229 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0017 14 1 0.4469 -2.4730 0.5561 15 6 1.4613 -3.3335 -1.2614 16 6 2.2059 -3.7605 0.0028 17 6 1.6553 -4.9581 0.7851 18 6 2.3949 -6.2193 0.3215 19 6 3.9029 -5.9899 0.4478 20 8 4.2973 -4.8933 -0.3785 21 6 3.7325 -3.6369 0.0098 22 1 -0.3633 0.0108 1.0276 23 1 -0.3633 0.8845 -0.5232 24 1 -0.3633 -0.8954 -0.5044 25 1 -0.0228 3.0838 1.4404 26 1 2.0566 -2.9562 -2.0929 27 1 0.5727 -3.9008 -1.5381 28 1 1.8201 -4.8069 1.8519 29 1 0.5882 -5.0648 0.5900 30 1 2.1013 -7.0640 0.9447 31 1 2.1427 -6.4284 -0.7182 32 1 4.4336 -6.8888 0.1343 33 1 4.1499 -5.7682 1.4860 34 1 4.0736 -3.3768 1.0119 35 1 4.0399 -2.8646 -0.6953 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183716037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:12 Heat of formation + Delta-G solvation = -50.877075 kcal Electronic energy + Delta-G solvation = -17684.461420 eV Core-core repulsion = 14876.626783 eV Total energy + Delta-G solvation = -2807.834637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87401 -38.02835 -35.74504 -34.52562 -32.41496 -31.59793 -27.90720 -26.40883 -24.91139 -24.83400 -22.71862 -22.18715 -19.07855 -18.26015 -16.92414 -16.40147 -15.63784 -15.47012 -14.91735 -14.61419 -14.07263 -13.91955 -13.77049 -13.25064 -12.68512 -12.45850 -12.26487 -11.82147 -11.65316 -11.37428 -11.23945 -11.13080 -10.92501 -10.86937 -10.46871 -10.35205 -10.31107 -9.73232 -9.34675 -9.11477 -9.00407 -8.25404 -7.68980 -6.33777 -3.87739 3.14443 3.24896 3.30210 3.55702 4.07260 4.16755 4.50109 4.67635 4.92334 4.99110 5.11349 5.15707 5.19508 5.38056 5.46025 5.54345 5.73923 5.87864 5.90464 5.97939 5.99418 6.07828 6.15704 6.29774 6.34522 6.41284 6.46036 6.85323 6.86310 7.19548 7.55689 7.58664 8.12525 8.47892 9.17902 9.42472 9.98932 10.70538 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.048484 B = 0.006021 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.369726 B = 4649.252790 C = 4992.525355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.439 5.439 3 C -0.307 4.307 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.881 5.881 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.471 3.529 12 O -0.588 6.588 13 C -0.155 4.155 14 H 0.112 0.888 15 C -0.145 4.145 16 C -0.136 4.136 17 C -0.083 4.083 18 C -0.149 4.149 19 C 0.058 3.942 20 O -0.389 6.389 21 C 0.103 3.897 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.267 0.733 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 -12.072 -1.281 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.156 5.156 3 C -0.435 4.435 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.520 5.520 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.260 3.740 12 O -0.474 6.474 13 C -0.177 4.177 14 H 0.130 0.870 15 C -0.183 4.183 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.187 4.187 19 C -0.019 4.019 20 O -0.308 6.308 21 C 0.028 3.972 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.980 -11.899 -1.339 12.014 hybrid contribution -0.386 0.986 0.299 1.101 sum -1.367 -10.912 -1.040 11.047 Atomic orbital electron populations 1.21484 0.81171 0.99131 1.01347 1.43515 1.05538 1.04627 1.61968 1.19688 0.99269 0.83562 1.40958 0.88217 1.25332 0.96615 1.00095 0.95270 1.70026 1.18787 1.29267 1.33899 0.85922 0.79643 0.81185 0.77952 1.20360 1.20977 1.19323 1.19144 0.87354 0.83766 0.83773 1.90428 1.13786 1.86477 1.56695 1.22329 1.01103 0.91202 1.03048 0.87019 1.22974 1.01955 1.01920 0.91471 1.22019 0.96056 0.94720 1.00890 1.21199 0.99118 0.92586 0.99168 1.22148 0.96696 0.97613 1.02238 1.22433 0.94101 0.90506 0.94841 1.87995 1.70399 1.16900 1.55465 1.22597 0.88165 0.84038 1.02391 0.92675 0.91288 0.95227 0.92250 0.88463 0.88840 0.91469 0.91565 0.91349 0.91128 0.89743 0.93703 0.92843 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.28 59.85 0.50 3.03 16 2 N -0.44 -11.32 3.02 -122.19 -0.37 -11.69 16 3 C -0.31 -8.58 9.28 -14.94 -0.14 -8.72 16 4 H 0.10 2.91 7.41 -52.49 -0.39 2.52 16 5 C 0.03 0.80 5.03 -17.47 -0.09 0.71 16 6 N -0.88 -23.56 10.77 55.50 0.60 -22.97 16 7 Si 0.93 20.79 29.58 -169.99 -5.03 15.76 16 8 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 C 0.47 11.45 7.39 -10.98 -0.08 11.37 16 12 O -0.59 -15.74 12.82 5.55 0.07 -15.67 16 13 C -0.16 -2.93 4.53 -91.88 -0.42 -3.35 16 14 H 0.11 1.95 7.25 -51.93 -0.38 1.57 16 15 C -0.15 -2.37 9.63 -26.80 -0.26 -2.62 16 16 C -0.14 -2.29 2.14 -154.52 -0.33 -2.62 16 17 C -0.08 -1.12 5.79 -26.39 -0.15 -1.27 16 18 C -0.15 -1.75 6.16 -26.50 -0.16 -1.91 16 19 C 0.06 0.76 6.72 37.18 0.25 1.01 16 20 O -0.39 -6.66 10.77 -35.23 -0.38 -7.04 16 21 C 0.10 1.94 5.07 37.24 0.19 2.13 16 22 H 0.05 1.28 7.63 -51.93 -0.40 0.88 16 23 H 0.07 1.63 7.00 -51.93 -0.36 1.26 16 24 H 0.03 0.55 6.61 -51.93 -0.34 0.21 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.13 2.71 6.02 -51.93 -0.31 2.39 16 LS Contribution 281.71 15.07 4.25 4.25 Total: -1.00 -30.08 281.71 -6.67 -36.75 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.12 Total: 2.86 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.69 Total: -2.24 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.23 Total: -34.66 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.31 Total: -22.72 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.08 -6.67 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183716037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.126 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds