Wall clock time and date at job start Sun Mar 29 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37094 * 119.99853 * 2 1 4 4 H 1.08000 * 119.99283 * 201.70377 * 3 2 1 5 5 C 1.38942 * 120.00462 * 21.69866 * 3 2 1 6 6 N 1.31414 * 119.99652 * 14.84268 * 5 3 2 7 7 Si 1.86796 * 120.00514 * 194.84272 * 5 3 2 8 8 H 1.48497 * 109.47369 * 89.99923 * 7 5 3 9 9 H 1.48498 * 109.47674 * 210.00289 * 7 5 3 10 10 H 1.48504 * 109.46696 * 330.00186 * 7 5 3 11 11 C 1.34777 * 119.99710 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99993 * 180.02562 * 11 2 1 13 13 C 1.50704 * 120.00061 * 359.97438 * 11 2 1 14 14 H 1.08994 * 115.55696 * 325.70355 * 13 11 2 15 15 C 1.53062 * 117.50153 * 111.44491 * 13 11 2 16 16 C 1.52729 * 117.50102 * 180.02562 * 13 11 2 17 17 C 1.53275 * 117.79953 * 144.81695 * 16 13 11 18 18 C 1.53391 * 108.35859 * 163.61321 * 17 16 13 19 19 C 1.53050 * 109.07872 * 53.63057 * 18 17 16 20 20 O 1.42852 * 109.84065 * 299.23256 * 19 18 17 21 21 C 1.43120 * 114.07798 * 64.23432 * 20 19 18 22 22 H 1.08997 * 109.47093 * 270.60400 * 1 2 3 23 23 H 1.08995 * 109.46961 * 30.60322 * 1 2 3 24 24 H 1.09002 * 109.46948 * 150.60847 * 1 2 3 25 25 H 0.97008 * 119.99642 * 179.97438 * 6 5 3 26 26 H 1.09005 * 117.50713 * 0.02562 * 15 13 11 27 27 H 1.08997 * 117.51031 * 214.93697 * 15 13 11 28 28 H 1.08993 * 109.68709 * 283.33337 * 17 16 13 29 29 H 1.09003 * 109.68474 * 43.85798 * 17 16 13 30 30 H 1.08995 * 109.54143 * 173.51522 * 18 17 16 31 31 H 1.09013 * 109.53563 * 293.67233 * 18 17 16 32 32 H 1.08999 * 109.40992 * 179.12327 * 19 18 17 33 33 H 1.09000 * 109.41238 * 59.34355 * 19 18 17 34 34 H 1.09005 * 109.59716 * 62.36650 * 21 20 19 35 35 H 1.09005 * 109.58940 * 182.80969 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2203 -0.3459 5 6 1.5297 2.3480 0.4449 6 7 0.4105 2.2734 1.1295 7 14 2.2859 4.0144 0.0698 8 1 1.7534 4.5205 -1.2207 9 1 1.9438 4.9688 1.1548 10 1 3.7618 3.8786 -0.0229 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0017 14 1 0.4469 -2.4730 0.5561 15 6 1.4613 -3.3335 -1.2614 16 6 2.2059 -3.7605 0.0028 17 6 1.6553 -4.9581 0.7851 18 6 2.3949 -6.2193 0.3215 19 6 3.9029 -5.9899 0.4478 20 8 4.2973 -4.8933 -0.3785 21 6 3.7325 -3.6369 0.0098 22 1 -0.3633 0.0108 1.0276 23 1 -0.3633 0.8845 -0.5232 24 1 -0.3633 -0.8954 -0.5044 25 1 -0.0228 3.0838 1.4404 26 1 2.0566 -2.9562 -2.0929 27 1 0.5727 -3.9008 -1.5381 28 1 1.8201 -4.8069 1.8519 29 1 0.5882 -5.0648 0.5900 30 1 2.1013 -7.0640 0.9447 31 1 2.1427 -6.4284 -0.7182 32 1 4.4336 -6.8888 0.1343 33 1 4.1499 -5.7682 1.4860 34 1 4.0736 -3.3768 1.0119 35 1 4.0399 -2.8646 -0.6953 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183716037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:12 Heat of formation + Delta-G solvation = -70.081067 kcal Electronic energy + Delta-G solvation = -17685.294168 eV Core-core repulsion = 14876.626783 eV Total energy + Delta-G solvation = -2808.667385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36266 -39.64587 -37.26363 -36.41073 -33.67134 -33.46618 -29.28730 -28.28674 -26.70493 -26.11576 -24.34672 -23.34253 -20.55305 -19.73906 -18.92907 -18.08058 -17.07633 -16.90122 -16.49194 -16.08360 -15.78661 -15.46624 -15.35936 -14.61163 -14.14931 -13.76700 -13.68076 -13.40600 -13.32736 -13.11975 -12.98561 -12.64216 -12.41348 -12.37743 -12.14039 -11.99728 -11.62136 -11.09747 -10.99256 -10.63698 -10.42874 -10.11034 -9.69475 -8.36017 -5.98895 1.34932 1.39677 1.51889 1.85919 2.25879 2.65971 2.98790 3.10920 3.23245 3.66933 3.77869 3.91529 3.96732 4.12300 4.26301 4.28520 4.53121 4.58625 4.64087 4.71968 4.81288 4.87409 4.98899 4.99468 5.01508 5.07985 5.12645 5.34467 5.37219 5.42191 5.45011 6.08141 6.31423 6.48067 7.15883 7.46991 8.04140 8.66674 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.048484 B = 0.006021 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.369726 B = 4649.252790 C = 4992.525355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.459 5.459 3 C -0.346 4.346 4 H 0.071 0.929 5 C -0.002 4.002 6 N -0.896 5.896 7 Si 0.990 3.010 8 H -0.265 1.265 9 H -0.273 1.273 10 H -0.277 1.277 11 C 0.461 3.539 12 O -0.625 6.625 13 C -0.171 4.171 14 H 0.133 0.867 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.081 4.081 18 C -0.142 4.142 19 C 0.045 3.955 20 O -0.405 6.405 21 C 0.111 3.889 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.274 0.726 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.031 0.969 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 -13.834 -1.375 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.177 5.177 3 C -0.474 4.474 4 H 0.089 0.911 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.813 3.187 8 H -0.190 1.190 9 H -0.198 1.198 10 H -0.202 1.202 11 C 0.251 3.749 12 O -0.513 6.513 13 C -0.192 4.192 14 H 0.151 0.849 15 C -0.162 4.162 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.179 4.179 19 C -0.031 4.031 20 O -0.325 6.325 21 C 0.035 3.965 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.154 0.846 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.650 -13.680 -1.431 14.007 hybrid contribution 0.211 1.457 0.345 1.513 sum -2.439 -12.222 -1.085 12.510 Atomic orbital electron populations 1.21412 0.79383 1.00246 1.00870 1.43791 1.06781 1.04559 1.62561 1.19619 0.98939 0.85638 1.43170 0.91110 1.26071 0.97022 1.02851 0.94463 1.70089 1.19297 1.30413 1.33610 0.84994 0.78254 0.76980 0.78471 1.18976 1.19769 1.20181 1.20146 0.87395 0.85342 0.82015 1.90415 1.15759 1.87456 1.57711 1.22196 1.01843 0.88999 1.06195 0.84891 1.23092 1.02876 1.00228 0.89989 1.22150 0.94447 0.94890 1.01834 1.21288 1.00642 0.91367 0.98517 1.22130 0.94802 0.97760 1.03207 1.22808 0.96066 0.89761 0.94507 1.87957 1.70927 1.17082 1.56511 1.22157 0.90107 0.84398 0.99849 0.93771 0.92956 0.91243 0.91667 0.90203 0.84587 0.91508 0.88999 0.87989 0.90688 0.87153 0.93574 0.95042 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.55 8.28 127.77 1.06 6.61 16 2 N -0.46 -24.30 3.02 -658.89 -1.99 -26.29 16 3 C -0.35 -20.10 9.28 84.04 0.78 -19.32 16 4 H 0.07 4.41 7.41 -2.91 -0.02 4.39 16 5 C 0.00 -0.12 5.03 84.92 0.43 0.31 16 6 N -0.90 -48.12 10.77 21.66 0.23 -47.89 16 7 Si 0.99 43.11 29.58 68.60 2.03 45.14 16 8 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 C 0.46 23.05 7.39 87.66 0.65 23.69 16 12 O -0.62 -35.46 12.82 -3.06 -0.04 -35.50 16 13 C -0.17 -6.26 4.53 -11.61 -0.05 -6.32 16 14 H 0.13 4.28 7.25 -2.39 -0.02 4.27 16 15 C -0.12 -3.76 9.63 30.55 0.29 -3.46 16 16 C -0.13 -4.26 2.14 -52.19 -0.11 -4.37 16 17 C -0.08 -1.87 5.79 30.82 0.18 -1.69 16 18 C -0.14 -2.72 6.16 30.74 0.19 -2.53 16 19 C 0.04 1.06 6.72 72.00 0.48 1.55 16 20 O -0.41 -13.74 10.77 -148.98 -1.61 -15.34 16 21 C 0.11 4.28 5.07 72.04 0.37 4.64 16 22 H 0.04 2.04 7.63 -2.39 -0.02 2.02 16 23 H 0.05 2.47 7.00 -2.39 -0.02 2.46 16 24 H 0.07 2.49 6.61 -2.39 -0.02 2.47 16 25 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 26 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 27 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.41 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.03 1.31 8.11 -2.38 -0.02 1.29 16 35 H 0.09 4.04 6.02 -2.38 -0.01 4.03 16 Total: -1.00 -68.62 281.71 3.96 -64.65 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.07 Total: 16.12 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 4.26 Total: -0.90 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.75 Total: -74.18 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.64 Total: -50.84 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.62 3.96 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183716037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.428 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds