Wall clock time and date at job start Sun Mar 29 2020 22:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37102 * 120.00156 * 2 1 4 4 H 1.07994 * 120.00431 * 201.83266 * 3 2 1 5 5 C 1.38957 * 119.99793 * 21.82719 * 3 2 1 6 6 N 1.31412 * 119.99819 * 14.35165 * 5 3 2 7 7 Si 1.86793 * 120.00260 * 194.35373 * 5 3 2 8 8 H 1.48499 * 109.47140 * 94.97528 * 7 5 3 9 9 H 1.48500 * 109.47414 * 214.98042 * 7 5 3 10 10 H 1.48499 * 109.47063 * 334.97823 * 7 5 3 11 11 C 1.34772 * 120.00474 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00589 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99934 * 0.02562 * 11 2 1 14 14 H 1.08997 * 115.55031 * 327.17365 * 13 11 2 15 15 C 1.53051 * 117.50659 * 181.46975 * 13 11 2 16 16 C 1.52726 * 59.94204 * 252.49445 * 15 13 11 17 17 C 1.53270 * 117.81285 * 107.72054 * 16 15 13 18 18 C 1.53399 * 108.36012 * 196.41432 * 17 16 15 19 19 C 1.53061 * 109.08188 * 306.34641 * 18 17 16 20 20 O 1.42834 * 109.82597 * 60.76564 * 19 18 17 21 21 C 1.43132 * 114.08567 * 295.76789 * 20 19 18 22 22 H 1.09005 * 109.46884 * 273.86562 * 1 2 3 23 23 H 1.08994 * 109.47359 * 33.86547 * 1 2 3 24 24 H 1.09003 * 109.46858 * 153.87121 * 1 2 3 25 25 H 0.97002 * 120.00142 * 180.02562 * 6 5 3 26 26 H 1.08994 * 117.51058 * 359.97438 * 15 13 11 27 27 H 1.09007 * 117.50325 * 145.02951 * 15 13 11 28 28 H 1.08999 * 109.68743 * 316.13337 * 17 16 15 29 29 H 1.09002 * 109.68969 * 76.69713 * 17 16 15 30 30 H 1.09007 * 109.53712 * 186.46746 * 18 17 16 31 31 H 1.08992 * 109.53881 * 66.23080 * 18 17 16 32 32 H 1.08997 * 109.41250 * 300.65652 * 19 18 17 33 33 H 1.09003 * 109.35314 * 180.83934 * 19 18 17 34 34 H 1.08996 * 109.59505 * 297.66058 * 21 20 19 35 35 H 1.09000 * 109.59061 * 177.21152 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1723 1.2209 -0.3478 5 6 1.5304 2.3476 0.4474 6 7 0.4074 2.2727 1.1258 7 14 2.2930 4.0137 0.0846 8 1 1.6801 4.5819 -1.1429 9 1 2.0501 4.9290 1.2285 10 1 3.7552 3.8548 -0.1203 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.4346 -2.4666 0.5310 15 6 2.2074 -3.7629 0.0326 16 6 1.4898 -3.3468 -1.2498 17 6 2.3449 -2.8319 -2.4129 18 6 1.4265 -2.1031 -3.4022 19 6 0.2760 -3.0331 -3.7951 20 8 -0.4805 -3.3845 -2.6356 21 6 0.2515 -4.1451 -1.6690 22 1 -0.3633 0.0693 1.0254 23 1 -0.3634 0.8533 -0.5726 24 1 -0.3633 -0.9227 -0.4526 25 1 -0.0257 3.0826 1.4379 26 1 3.2929 -3.6680 0.0555 27 1 1.7970 -4.6064 0.5879 28 1 3.1000 -2.1420 -2.0362 29 1 2.8297 -3.6710 -2.9119 30 1 1.9936 -1.8288 -4.2918 31 1 1.0252 -1.2049 -2.9331 32 1 0.6802 -3.9366 -4.2515 33 1 -0.3714 -2.5247 -4.5097 34 1 0.5598 -5.0940 -2.1078 35 1 -0.3766 -4.3298 -0.7975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183716039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:16 Heat of formation + Delta-G solvation = -53.142315 kcal Electronic energy + Delta-G solvation = -18090.100026 eV Core-core repulsion = 15282.167160 eV Total energy + Delta-G solvation = -2807.932865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91977 -38.00205 -35.77114 -34.38066 -32.40563 -31.51955 -28.02871 -26.36684 -25.13809 -24.73659 -22.70695 -21.81293 -19.46866 -17.90352 -16.82541 -16.27477 -15.91600 -15.73151 -14.92821 -14.64974 -14.08274 -13.99419 -13.48383 -12.93407 -12.87515 -12.49287 -12.33581 -11.82787 -11.43005 -11.23184 -11.19265 -11.09202 -10.80739 -10.74760 -10.44959 -10.32282 -10.26640 -9.79795 -9.38983 -9.23349 -8.98020 -8.30798 -7.62056 -6.27684 -3.82702 3.16077 3.26647 3.32323 3.55276 4.03160 4.15125 4.44854 4.73237 4.99787 5.06707 5.10641 5.22481 5.26873 5.34702 5.49880 5.58076 5.68168 5.75412 5.83814 5.98132 6.05478 6.14978 6.19652 6.35497 6.47531 6.56630 6.59978 6.70844 6.95735 7.29361 7.32900 7.60172 8.18020 8.53781 9.23448 9.49037 10.06419 10.75784 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.007631 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.517581 B = 3668.242468 C = 3828.194628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.440 5.440 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.880 5.880 7 Si 0.924 3.076 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.477 3.523 12 O -0.592 6.592 13 C -0.151 4.151 14 H 0.111 0.889 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.090 4.090 18 C -0.153 4.153 19 C 0.064 3.936 20 O -0.379 6.379 21 C 0.101 3.899 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.267 0.733 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -10.026 -6.575 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.157 5.157 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.519 5.519 7 Si 0.751 3.249 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.265 3.735 12 O -0.478 6.478 13 C -0.173 4.173 14 H 0.129 0.871 15 C -0.180 4.180 16 C -0.147 4.147 17 C -0.128 4.128 18 C -0.191 4.191 19 C -0.013 4.013 20 O -0.298 6.298 21 C 0.025 3.975 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.124 0.876 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.463 -9.783 -6.459 11.979 hybrid contribution 0.337 0.916 0.017 0.976 sum -2.127 -8.868 -6.443 11.165 Atomic orbital electron populations 1.21488 0.81076 0.98804 1.01759 1.43488 1.05549 1.04557 1.62093 1.19663 0.99213 0.83690 1.40790 0.88418 1.25325 0.96609 0.99996 0.95395 1.70025 1.18538 1.29122 1.34224 0.85937 0.79595 0.81468 0.77881 1.20466 1.20959 1.19359 1.19030 0.87253 0.83742 0.83461 1.90481 1.13890 1.86976 1.56499 1.22378 1.01309 0.92072 1.01523 0.87130 1.22895 1.00198 0.96588 0.98335 1.22062 0.99312 1.02813 0.90517 1.21263 0.97479 0.99974 0.94039 1.22163 0.97236 1.00050 0.99614 1.22502 0.93897 0.97386 0.87472 1.87949 1.37816 1.73749 1.30268 1.22165 0.91172 0.92157 0.92028 0.92438 0.91893 0.94786 0.92328 0.87595 0.88826 0.89223 0.92135 0.91238 0.90400 0.93717 0.89297 0.92876 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 8.36 59.84 0.50 3.14 16 2 N -0.44 -11.56 3.02 -122.20 -0.37 -11.93 16 3 C -0.31 -8.68 9.29 -14.93 -0.14 -8.82 16 4 H 0.10 2.90 7.41 -52.49 -0.39 2.51 16 5 C 0.03 0.81 5.07 -17.46 -0.09 0.72 16 6 N -0.88 -23.97 10.73 55.50 0.60 -23.37 16 7 Si 0.92 21.10 29.58 -169.99 -5.03 16.07 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 C 0.48 11.85 6.34 -10.99 -0.07 11.78 16 12 O -0.59 -16.47 14.71 5.54 0.08 -16.39 16 13 C -0.15 -2.93 4.53 -91.87 -0.42 -3.35 16 14 H 0.11 2.02 7.11 -51.93 -0.37 1.65 16 15 C -0.14 -2.32 9.51 -26.85 -0.26 -2.58 16 16 C -0.15 -2.37 2.14 -154.55 -0.33 -2.70 16 17 C -0.09 -1.50 5.45 -26.38 -0.14 -1.65 16 18 C -0.15 -2.36 6.16 -26.49 -0.16 -2.52 16 19 C 0.06 0.85 6.72 37.19 0.25 1.10 16 20 O -0.38 -5.82 10.77 -35.23 -0.38 -6.19 16 21 C 0.10 1.39 6.63 37.25 0.25 1.64 16 22 H 0.06 1.40 7.45 -51.93 -0.39 1.01 16 23 H 0.06 1.54 7.22 -51.93 -0.37 1.16 16 24 H 0.03 0.70 6.39 -51.93 -0.33 0.36 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.11 1.89 7.67 -51.93 -0.40 1.49 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.83 5.98 -51.93 -0.31 1.51 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -31.17 282.91 -6.52 -37.69 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.07 Total: 3.09 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.61 Total: -3.23 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.23 Total: -35.30 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.30 Total: -22.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.17 -6.52 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183716039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.453 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds