Wall clock time and date at job start Sun Mar 29 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37102 * 120.00156 * 2 1 4 4 H 1.07994 * 120.00431 * 201.83266 * 3 2 1 5 5 C 1.38957 * 119.99793 * 21.82719 * 3 2 1 6 6 N 1.31412 * 119.99819 * 14.35165 * 5 3 2 7 7 Si 1.86793 * 120.00260 * 194.35373 * 5 3 2 8 8 H 1.48499 * 109.47140 * 94.97528 * 7 5 3 9 9 H 1.48500 * 109.47414 * 214.98042 * 7 5 3 10 10 H 1.48499 * 109.47063 * 334.97823 * 7 5 3 11 11 C 1.34772 * 120.00474 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00589 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99934 * 0.02562 * 11 2 1 14 14 H 1.08997 * 115.55031 * 327.17365 * 13 11 2 15 15 C 1.53051 * 117.50659 * 181.46975 * 13 11 2 16 16 C 1.52726 * 59.94204 * 252.49445 * 15 13 11 17 17 C 1.53270 * 117.81285 * 107.72054 * 16 15 13 18 18 C 1.53399 * 108.36012 * 196.41432 * 17 16 15 19 19 C 1.53061 * 109.08188 * 306.34641 * 18 17 16 20 20 O 1.42834 * 109.82597 * 60.76564 * 19 18 17 21 21 C 1.43132 * 114.08567 * 295.76789 * 20 19 18 22 22 H 1.09005 * 109.46884 * 273.86562 * 1 2 3 23 23 H 1.08994 * 109.47359 * 33.86547 * 1 2 3 24 24 H 1.09003 * 109.46858 * 153.87121 * 1 2 3 25 25 H 0.97002 * 120.00142 * 180.02562 * 6 5 3 26 26 H 1.08994 * 117.51058 * 359.97438 * 15 13 11 27 27 H 1.09007 * 117.50325 * 145.02951 * 15 13 11 28 28 H 1.08999 * 109.68743 * 316.13337 * 17 16 15 29 29 H 1.09002 * 109.68969 * 76.69713 * 17 16 15 30 30 H 1.09007 * 109.53712 * 186.46746 * 18 17 16 31 31 H 1.08992 * 109.53881 * 66.23080 * 18 17 16 32 32 H 1.08997 * 109.41250 * 300.65652 * 19 18 17 33 33 H 1.09003 * 109.35314 * 180.83934 * 19 18 17 34 34 H 1.08996 * 109.59505 * 297.66058 * 21 20 19 35 35 H 1.09000 * 109.59061 * 177.21152 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1723 1.2209 -0.3478 5 6 1.5304 2.3476 0.4474 6 7 0.4074 2.2727 1.1258 7 14 2.2930 4.0137 0.0846 8 1 1.6801 4.5819 -1.1429 9 1 2.0501 4.9290 1.2285 10 1 3.7552 3.8548 -0.1203 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.4346 -2.4666 0.5310 15 6 2.2074 -3.7629 0.0326 16 6 1.4898 -3.3468 -1.2498 17 6 2.3449 -2.8319 -2.4129 18 6 1.4265 -2.1031 -3.4022 19 6 0.2760 -3.0331 -3.7951 20 8 -0.4805 -3.3845 -2.6356 21 6 0.2515 -4.1451 -1.6690 22 1 -0.3633 0.0693 1.0254 23 1 -0.3634 0.8533 -0.5726 24 1 -0.3633 -0.9227 -0.4526 25 1 -0.0257 3.0826 1.4379 26 1 3.2929 -3.6680 0.0555 27 1 1.7970 -4.6064 0.5879 28 1 3.1000 -2.1420 -2.0362 29 1 2.8297 -3.6710 -2.9119 30 1 1.9936 -1.8288 -4.2918 31 1 1.0252 -1.2049 -2.9331 32 1 0.6802 -3.9366 -4.2515 33 1 -0.3714 -2.5247 -4.5097 34 1 0.5598 -5.0940 -2.1078 35 1 -0.3766 -4.3298 -0.7975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183716039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:15 Heat of formation + Delta-G solvation = -73.630428 kcal Electronic energy + Delta-G solvation = -18090.988457 eV Core-core repulsion = 15282.167160 eV Total energy + Delta-G solvation = -2808.821297 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38212 -39.61054 -37.28897 -36.32520 -33.68486 -33.54654 -29.31342 -28.30210 -26.81826 -26.11346 -24.39184 -23.03616 -20.95774 -19.51781 -18.87378 -18.00348 -17.13813 -16.97612 -16.71851 -15.99666 -15.88957 -15.62825 -15.12017 -14.53691 -14.10313 -13.98970 -13.72983 -13.45474 -13.30857 -13.10466 -12.86839 -12.66276 -12.46783 -12.19591 -12.14289 -12.05018 -11.59739 -11.15089 -11.05403 -10.73452 -10.51102 -10.16436 -9.69140 -8.35169 -5.99427 1.33190 1.37226 1.50387 1.86506 2.25042 2.71082 2.99246 3.05600 3.27325 3.68952 3.74009 3.89985 3.92959 4.09365 4.25018 4.30585 4.48524 4.58675 4.64691 4.67089 4.71051 4.84157 4.84859 4.99155 5.00208 5.09752 5.15992 5.29628 5.33985 5.38422 5.42665 6.07470 6.28988 6.47420 7.15594 7.47591 8.05515 8.67137 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.007631 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.517581 B = 3668.242468 C = 3828.194628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.459 5.459 3 C -0.344 4.344 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.896 5.896 7 Si 0.989 3.011 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.472 3.528 12 O -0.634 6.634 13 C -0.182 4.182 14 H 0.124 0.876 15 C -0.125 4.125 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.151 4.151 19 C 0.067 3.933 20 O -0.397 6.397 21 C 0.103 3.897 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.273 0.727 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -11.669 -7.469 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.176 5.176 3 C -0.472 4.472 4 H 0.087 0.913 5 C -0.206 4.206 6 N -0.535 5.535 7 Si 0.812 3.188 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.200 1.200 11 C 0.262 3.738 12 O -0.522 6.522 13 C -0.203 4.203 14 H 0.142 0.858 15 C -0.162 4.162 16 C -0.129 4.129 17 C -0.132 4.132 18 C -0.189 4.189 19 C -0.010 4.010 20 O -0.316 6.316 21 C 0.027 3.973 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.155 0.845 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.702 -11.436 -7.352 14.091 hybrid contribution 0.776 1.396 0.291 1.624 sum -2.926 -10.040 -7.061 12.618 Atomic orbital electron populations 1.21316 0.79638 0.99458 1.00838 1.43725 1.06534 1.04638 1.62735 1.19594 0.98858 0.85731 1.43062 0.91291 1.26102 0.97042 1.02901 0.94521 1.70091 1.19103 1.30355 1.33921 0.84986 0.78300 0.77033 0.78432 1.18997 1.19676 1.20049 1.19970 0.87160 0.85272 0.81400 1.90435 1.15992 1.87949 1.57853 1.22270 1.02070 0.90252 1.05686 0.85835 1.23007 0.98880 0.95660 0.98682 1.22268 1.00315 1.00830 0.89462 1.21271 0.96952 1.00103 0.94879 1.22147 0.98195 0.98987 0.99537 1.22609 0.93053 0.98061 0.87245 1.87938 1.38550 1.74143 1.30992 1.22369 0.89776 0.92430 0.92739 0.93644 0.93554 0.91943 0.91694 0.89780 0.84521 0.93974 0.89166 0.89778 0.94493 0.90762 0.87818 0.89519 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.27 8.36 127.77 1.07 7.34 16 2 N -0.46 -25.15 3.02 -658.90 -1.99 -27.13 16 3 C -0.34 -20.53 9.29 84.04 0.78 -19.75 16 4 H 0.07 4.39 7.41 -2.91 -0.02 4.37 16 5 C 0.00 -0.22 5.07 84.93 0.43 0.21 16 6 N -0.90 -49.42 10.73 21.67 0.23 -49.19 16 7 Si 0.99 43.96 29.58 68.60 2.03 45.99 16 8 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 C 0.47 24.35 6.34 87.66 0.56 24.91 16 12 O -0.63 -37.24 14.71 -3.08 -0.05 -37.28 16 13 C -0.18 -6.94 4.53 -11.60 -0.05 -6.99 16 14 H 0.12 4.35 7.11 -2.39 -0.02 4.33 16 15 C -0.13 -3.82 9.51 30.52 0.29 -3.53 16 16 C -0.13 -3.87 2.14 -52.21 -0.11 -3.99 16 17 C -0.09 -3.08 5.45 30.82 0.17 -2.91 16 18 C -0.15 -4.53 6.16 30.75 0.19 -4.34 16 19 C 0.07 1.56 6.72 72.00 0.48 2.04 16 20 O -0.40 -10.79 10.77 -148.98 -1.61 -12.39 16 21 C 0.10 2.38 6.63 72.04 0.48 2.86 16 22 H 0.04 2.25 7.45 -2.38 -0.02 2.23 16 23 H 0.05 2.32 7.22 -2.39 -0.02 2.30 16 24 H 0.06 2.57 6.39 -2.39 -0.02 2.55 16 25 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 26 H 0.08 2.97 7.67 -2.39 -0.02 2.96 16 27 H 0.14 2.99 8.14 -2.38 -0.02 2.97 16 28 H 0.04 1.78 5.98 -2.39 -0.01 1.76 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 2.20 8.08 -2.39 -0.02 2.18 16 Total: -1.00 -71.35 282.91 3.98 -67.38 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.07 Total: 16.78 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.28 Total: -4.14 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -1.76 Total: -76.32 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.65 Total: -49.68 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.35 3.98 -67.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183716039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.254 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds