Wall clock time and date at job start Sun Mar 29 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49518 * 111.80589 * 2 1 4 4 H 1.08998 * 111.85212 * 42.55354 * 3 2 1 5 5 C 1.54709 * 104.07689 * 281.24335 * 3 2 1 6 6 C 1.54217 * 104.94543 * 334.69288 * 5 3 2 7 7 H 1.09002 * 110.32334 * 242.00223 * 6 5 3 8 8 O 1.42897 * 110.32318 * 119.89639 * 6 5 3 9 9 C 1.42911 * 113.99820 * 92.82602 * 8 6 5 10 10 C 1.50703 * 109.46939 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00030 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99541 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00189 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00042 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46896 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47106 * 120.00173 * 14 12 10 17 17 H 1.48494 * 109.47484 * 240.00968 * 14 12 10 18 18 C 1.48621 * 111.00005 * 244.69725 * 2 1 3 19 19 H 1.09001 * 112.06648 * 318.26592 * 18 2 1 20 20 C 1.53900 * 107.89613 * 194.54382 * 18 2 1 21 21 C 1.51519 * 107.77353 * 301.60520 * 20 18 2 22 22 O 1.20763 * 121.00232 * 225.51723 * 21 20 18 23 23 C 1.51519 * 117.99432 * 45.53262 * 21 20 18 24 24 H 1.09002 * 109.47087 * 175.30047 * 1 2 3 25 25 H 1.08993 * 109.47304 * 295.30513 * 1 2 3 26 26 H 1.09002 * 109.46601 * 55.30631 * 1 2 3 27 27 H 1.09001 * 109.61515 * 216.21706 * 5 3 2 28 28 H 1.09002 * 111.14149 * 93.94724 * 5 3 2 29 29 H 1.08998 * 109.46822 * 299.99823 * 9 8 6 30 30 H 1.08994 * 109.46750 * 59.99867 * 9 8 6 31 31 H 0.97000 * 119.99425 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.80419 * 61.17200 * 20 18 2 33 33 H 1.09008 * 109.79942 * 182.03672 * 20 18 2 34 34 H 1.08998 * 109.79912 * 74.03448 * 23 21 20 35 35 H 1.09002 * 109.80283 * 194.84791 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0244 1.3882 0.0000 4 1 1.4832 2.0417 0.6842 5 6 1.8925 1.8462 -1.4718 6 6 1.8940 0.5426 -2.2957 7 1 2.7509 0.5213 -2.9691 8 8 0.6782 0.4226 -3.0370 9 6 0.7515 0.9505 -4.3630 10 6 -0.5783 0.7712 -5.0491 11 1 -1.3974 0.3016 -4.5250 12 6 -0.7493 1.2078 -6.3457 13 7 0.2482 1.7801 -6.9839 14 14 -2.3972 0.9849 -7.1966 15 1 -3.3468 0.3181 -6.2697 16 1 -2.9366 2.3125 -7.5864 17 1 -2.2188 0.1474 -8.4098 18 6 2.0016 -0.5930 -1.2544 19 1 1.4446 -1.4798 -1.5568 20 6 3.4946 -0.8971 -1.0371 21 6 4.1834 0.4030 -0.6750 22 8 5.2300 0.7167 -1.1896 23 6 3.5198 1.2974 0.3523 24 1 -0.3633 -1.0242 -0.0842 25 1 -0.3633 0.4392 0.9290 26 1 -0.3632 0.5850 -0.8450 27 1 2.7487 2.4650 -1.7406 28 1 0.9637 2.3940 -1.6314 29 1 0.9977 2.0114 -4.3186 30 1 1.5229 0.4215 -4.9225 31 1 0.1279 2.0869 -7.8962 32 1 3.6108 -1.6150 -0.2252 33 1 3.9262 -1.3011 -1.9529 34 1 3.6393 0.8687 1.3473 35 1 3.9681 2.2905 0.3220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:09 Heat of formation + Delta-G solvation = -78.601645 kcal Electronic energy + Delta-G solvation = -17816.001341 eV Core-core repulsion = 15006.964476 eV Total energy + Delta-G solvation = -2809.036865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91207 -38.27496 -36.07758 -32.75961 -31.86445 -31.57241 -29.39127 -27.12909 -25.21438 -24.29830 -22.39167 -21.43493 -20.33631 -18.45380 -16.71165 -16.43445 -16.08111 -15.32483 -14.84970 -14.66122 -14.34375 -14.25011 -13.98001 -13.41423 -13.09121 -12.65863 -12.46125 -12.28936 -12.05920 -11.71462 -11.25701 -11.22704 -11.08505 -10.93070 -10.81010 -10.69196 -10.49992 -10.11127 -9.39090 -9.17142 -8.95056 -8.44899 -8.24127 -6.16806 -4.19551 2.00168 3.24871 3.31580 3.37221 3.91054 4.06489 4.26831 4.57155 4.68542 4.87235 4.97628 5.07387 5.16008 5.20235 5.33843 5.43711 5.53750 5.64735 5.71569 5.80811 5.87478 5.93597 6.01562 6.06007 6.16744 6.22089 6.40320 6.81592 7.03101 7.05065 7.34584 7.53226 7.72420 8.07247 8.45996 8.93072 9.45719 10.94541 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036260 B = 0.006200 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.005115 B = 4515.222910 C = 4877.072189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.510 5.510 3 C 0.071 3.929 4 H 0.101 0.899 5 C -0.179 4.179 6 C 0.056 3.944 7 H 0.061 0.939 8 O -0.380 6.380 9 C 0.195 3.805 10 C -0.516 4.516 11 H 0.067 0.933 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.072 3.928 19 H 0.111 0.889 20 C -0.156 4.156 21 C 0.366 3.634 22 O -0.463 6.463 23 C -0.155 4.155 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.004 0.996 30 H 0.005 0.995 31 H 0.264 0.736 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -2.650 14.733 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.233 5.233 3 C -0.038 4.038 4 H 0.119 0.881 5 C -0.218 4.218 6 C -0.005 4.005 7 H 0.079 0.921 8 O -0.300 6.300 9 C 0.121 3.879 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.735 3.265 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.037 4.037 19 H 0.129 0.871 20 C -0.194 4.194 21 C 0.242 3.758 22 O -0.337 6.337 23 C -0.193 4.193 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.327 -2.794 14.842 15.711 hybrid contribution -0.909 0.625 -1.467 1.836 sum 3.418 -2.169 13.375 13.974 Atomic orbital electron populations 1.22449 0.86820 1.02656 1.01503 1.65347 1.09257 1.14647 1.34048 1.23054 0.93598 0.90786 0.96363 0.88107 1.23569 1.03659 0.99303 0.95309 1.23372 0.90442 0.92989 0.93671 0.92075 1.87904 1.30820 1.82381 1.28889 1.20275 0.97877 0.92921 0.76858 1.21062 0.97102 1.39500 0.97778 0.91501 1.24962 0.97570 0.94970 0.96981 1.69978 1.31270 1.40044 1.12275 0.86286 0.83020 0.77916 0.79311 1.19464 1.20812 1.20769 1.23026 0.93731 0.98581 0.88369 0.87060 1.22494 0.95377 0.97301 1.04194 1.24934 0.83691 0.87623 0.79544 1.90406 1.21966 1.73335 1.47957 1.22504 0.95758 1.00816 1.00247 0.91319 0.91899 0.92795 0.91106 0.89497 0.97769 0.97675 0.92622 0.87330 0.88805 0.87655 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.44 60.07 0.57 0.75 16 2 N -0.51 -6.67 5.23 -220.32 -1.15 -7.82 16 3 C 0.07 0.88 3.64 -64.88 -0.24 0.64 16 4 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 5 C -0.18 -2.85 5.31 -25.20 -0.13 -2.98 16 6 C 0.06 1.02 2.27 -25.33 -0.06 0.96 16 7 H 0.06 1.19 7.37 -51.93 -0.38 0.81 16 8 O -0.38 -8.70 8.92 -35.23 -0.31 -9.01 16 9 C 0.19 5.25 5.54 36.01 0.20 5.45 16 10 C -0.52 -14.93 9.43 -34.44 -0.32 -15.25 16 11 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 14 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.07 1.05 3.29 -65.53 -0.22 0.83 16 19 H 0.11 1.65 8.06 -51.93 -0.42 1.23 16 20 C -0.16 -1.96 5.77 -27.01 -0.16 -2.12 16 21 C 0.37 5.06 5.50 -28.23 -0.16 4.91 16 22 O -0.46 -7.89 17.90 6.00 0.11 -7.78 16 23 C -0.16 -1.74 5.79 -27.01 -0.16 -1.90 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 27 H 0.07 1.11 7.72 -51.93 -0.40 0.71 16 28 H 0.09 1.50 7.96 -51.93 -0.41 1.09 16 29 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.01 0.15 8.10 -51.93 -0.42 -0.27 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -31.55 284.41 -7.41 -38.96 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -5.29 Total: -2.01 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.77 Total: -7.18 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: -0.42 Total: -33.84 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.21 Total: -16.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.55 -7.41 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.639 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds