Wall clock time and date at job start Sun Mar 29 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49518 * 111.80589 * 2 1 4 4 H 1.08998 * 111.85212 * 42.55354 * 3 2 1 5 5 C 1.54709 * 104.07689 * 281.24335 * 3 2 1 6 6 C 1.54217 * 104.94543 * 334.69288 * 5 3 2 7 7 H 1.09002 * 110.32334 * 242.00223 * 6 5 3 8 8 O 1.42897 * 110.32318 * 119.89639 * 6 5 3 9 9 C 1.42911 * 113.99820 * 92.82602 * 8 6 5 10 10 C 1.50703 * 109.46939 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00030 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99541 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00189 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00042 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46896 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47106 * 120.00173 * 14 12 10 17 17 H 1.48494 * 109.47484 * 240.00968 * 14 12 10 18 18 C 1.48621 * 111.00005 * 244.69725 * 2 1 3 19 19 H 1.09001 * 112.06648 * 318.26592 * 18 2 1 20 20 C 1.53900 * 107.89613 * 194.54382 * 18 2 1 21 21 C 1.51519 * 107.77353 * 301.60520 * 20 18 2 22 22 O 1.20763 * 121.00232 * 225.51723 * 21 20 18 23 23 C 1.51519 * 117.99432 * 45.53262 * 21 20 18 24 24 H 1.09002 * 109.47087 * 175.30047 * 1 2 3 25 25 H 1.08993 * 109.47304 * 295.30513 * 1 2 3 26 26 H 1.09002 * 109.46601 * 55.30631 * 1 2 3 27 27 H 1.09001 * 109.61515 * 216.21706 * 5 3 2 28 28 H 1.09002 * 111.14149 * 93.94724 * 5 3 2 29 29 H 1.08998 * 109.46822 * 299.99823 * 9 8 6 30 30 H 1.08994 * 109.46750 * 59.99867 * 9 8 6 31 31 H 0.97000 * 119.99425 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.80419 * 61.17200 * 20 18 2 33 33 H 1.09008 * 109.79942 * 182.03672 * 20 18 2 34 34 H 1.08998 * 109.79912 * 74.03448 * 23 21 20 35 35 H 1.09002 * 109.80283 * 194.84791 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0244 1.3882 0.0000 4 1 1.4832 2.0417 0.6842 5 6 1.8925 1.8462 -1.4718 6 6 1.8940 0.5426 -2.2957 7 1 2.7509 0.5213 -2.9691 8 8 0.6782 0.4226 -3.0370 9 6 0.7515 0.9505 -4.3630 10 6 -0.5783 0.7712 -5.0491 11 1 -1.3974 0.3016 -4.5250 12 6 -0.7493 1.2078 -6.3457 13 7 0.2482 1.7801 -6.9839 14 14 -2.3972 0.9849 -7.1966 15 1 -3.3468 0.3181 -6.2697 16 1 -2.9366 2.3125 -7.5864 17 1 -2.2188 0.1474 -8.4098 18 6 2.0016 -0.5930 -1.2544 19 1 1.4446 -1.4798 -1.5568 20 6 3.4946 -0.8971 -1.0371 21 6 4.1834 0.4030 -0.6750 22 8 5.2300 0.7167 -1.1896 23 6 3.5198 1.2974 0.3523 24 1 -0.3633 -1.0242 -0.0842 25 1 -0.3633 0.4392 0.9290 26 1 -0.3632 0.5850 -0.8450 27 1 2.7487 2.4650 -1.7406 28 1 0.9637 2.3940 -1.6314 29 1 0.9977 2.0114 -4.3186 30 1 1.5229 0.4215 -4.9225 31 1 0.1279 2.0869 -7.8962 32 1 3.6108 -1.6150 -0.2252 33 1 3.9262 -1.3011 -1.9529 34 1 3.6393 0.8687 1.3473 35 1 3.9681 2.2905 0.3220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:09 Heat of formation + Delta-G solvation = -101.282397 kcal Electronic energy + Delta-G solvation = -17816.984852 eV Core-core repulsion = 15006.964476 eV Total energy + Delta-G solvation = -2810.020376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11051 -39.55878 -37.80664 -34.93472 -32.94203 -32.70384 -30.85986 -29.15432 -26.32464 -25.61313 -24.44581 -22.55546 -21.69665 -19.64552 -18.62774 -18.02565 -17.51585 -16.61636 -16.42610 -16.08976 -15.84340 -15.68077 -15.18427 -14.87635 -14.71894 -14.04576 -13.69293 -13.59101 -13.31390 -13.27888 -13.01209 -12.87111 -12.48276 -12.32699 -12.19882 -12.12916 -11.96541 -11.78444 -11.31668 -10.93942 -10.50531 -10.31060 -9.61625 -8.37428 -6.51187 0.90897 1.37243 1.38770 1.53462 2.29641 2.75634 2.90780 2.96546 3.12341 3.50712 3.79541 3.83308 3.85135 3.99002 4.11406 4.31081 4.36067 4.47915 4.64298 4.66042 4.74696 4.79375 4.84387 4.90375 4.91643 5.01262 5.07085 5.10977 5.21388 5.49460 5.68722 5.88814 5.93101 6.43767 6.46117 6.73313 7.21289 8.75160 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036260 B = 0.006200 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.005115 B = 4515.222910 C = 4877.072189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.494 5.494 3 C 0.081 3.919 4 H 0.131 0.869 5 C -0.179 4.179 6 C 0.040 3.960 7 H 0.038 0.962 8 O -0.386 6.386 9 C 0.213 3.787 10 C -0.546 4.546 11 H 0.065 0.935 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.272 1.272 18 C 0.080 3.920 19 H 0.109 0.891 20 C -0.151 4.151 21 C 0.362 3.638 22 O -0.502 6.502 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.068 0.932 29 H -0.021 1.021 30 H -0.021 1.021 31 H 0.271 0.729 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -3.155 16.619 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.216 5.216 3 C -0.028 4.028 4 H 0.149 0.851 5 C -0.218 4.218 6 C -0.020 4.020 7 H 0.056 0.944 8 O -0.306 6.306 9 C 0.138 3.862 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.808 3.192 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.030 4.030 19 H 0.127 0.873 20 C -0.189 4.189 21 C 0.241 3.759 22 O -0.379 6.379 23 C -0.184 4.184 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.087 0.913 29 H -0.003 1.003 30 H -0.004 1.004 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.304 -3.306 16.761 17.400 hybrid contribution -0.540 0.791 -2.028 2.243 sum 2.764 -2.516 14.733 15.199 Atomic orbital electron populations 1.22496 0.86676 1.02687 1.01511 1.65429 1.09246 1.14794 1.32140 1.23157 0.94978 0.90606 0.94019 0.85136 1.23529 1.02538 0.97800 0.97926 1.23795 0.87714 0.96492 0.93973 0.94414 1.87866 1.33371 1.82179 1.27138 1.19810 0.96628 0.91085 0.78670 1.21391 0.97665 1.40503 0.98805 0.91632 1.26024 1.01984 0.93919 0.97457 1.70097 1.33754 1.40415 1.12906 0.85099 0.77598 0.78401 0.78094 1.18462 1.19697 1.19678 1.22978 0.95309 0.97016 0.87660 0.87284 1.22515 0.93380 0.97779 1.05237 1.25448 0.83051 0.88087 0.79310 1.90403 1.23887 1.74130 1.49478 1.22531 0.94015 1.01047 1.00843 0.90808 0.89022 0.96190 0.91485 0.91321 1.00281 1.00352 0.92021 0.83829 0.89610 0.84162 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.44 127.69 1.21 1.56 16 2 N -0.49 -11.63 5.23 -850.96 -4.45 -16.08 16 3 C 0.08 1.80 3.64 45.29 0.17 1.97 16 4 H 0.13 2.27 8.10 -2.39 -0.02 2.25 16 5 C -0.18 -5.74 5.31 31.59 0.17 -5.57 16 6 C 0.04 1.52 2.27 31.50 0.07 1.60 16 7 H 0.04 1.58 7.37 -2.39 -0.02 1.56 16 8 O -0.39 -18.47 8.92 -148.98 -1.33 -19.80 16 9 C 0.21 12.15 5.54 71.24 0.39 12.54 16 10 C -0.55 -32.50 9.43 25.60 0.24 -32.26 16 11 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 12 C 0.00 0.27 5.46 84.65 0.46 0.73 16 13 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 14 Si 0.99 44.28 29.54 68.60 2.03 46.31 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 18 C 0.08 2.26 3.29 45.38 0.15 2.41 16 19 H 0.11 3.17 8.06 -2.39 -0.02 3.15 16 20 C -0.15 -3.60 5.77 30.41 0.18 -3.42 16 21 C 0.36 9.52 5.50 29.62 0.16 9.69 16 22 O -0.50 -17.06 17.90 -1.46 -0.03 -17.09 16 23 C -0.15 -2.84 5.79 30.41 0.18 -2.66 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.02 0.62 6.32 -2.39 -0.02 0.60 16 27 H 0.07 2.17 7.72 -2.39 -0.02 2.15 16 28 H 0.07 2.45 7.96 -2.39 -0.02 2.43 16 29 H -0.02 -1.25 8.14 -2.39 -0.02 -1.26 16 30 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -70.65 284.41 0.94 -69.71 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.06 Total: 6.95 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 3.37 Total: -13.43 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -4.16 Total: -72.65 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.36 Total: -36.89 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.65 0.94 -69.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.570 kcal (2) G-P(sol) polarization free energy of solvation -70.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds