Wall clock time and date at job start Sun Mar 29 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48720 * 110.99719 * 2 1 4 4 H 1.08998 * 112.75050 * 315.54664 * 3 2 1 5 5 C 1.53711 * 107.23609 * 191.65092 * 3 2 1 6 6 C 1.53135 * 108.89219 * 295.91727 * 5 3 2 7 7 H 1.09001 * 109.38809 * 174.06754 * 6 5 3 8 8 O 1.42898 * 109.42440 * 293.93247 * 6 5 3 9 9 C 1.42909 * 114.00197 * 270.26080 * 8 6 5 10 10 C 1.50696 * 109.47070 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 C 1.53130 * 109.73220 * 54.01164 * 6 5 3 19 19 C 1.48709 * 110.99798 * 114.46325 * 2 1 3 20 20 H 1.08996 * 112.74836 * 44.44547 * 19 2 1 21 21 C 1.54611 * 104.22619 * 282.48754 * 19 2 1 22 22 H 1.09004 * 117.97759 * 192.62456 * 21 19 2 23 23 O 1.42899 * 117.93785 * 35.38102 * 21 19 2 24 24 C 1.42904 * 65.34562 * 269.74693 * 23 21 19 25 25 H 1.08991 * 119.98329 * 248.26709 * 24 23 21 26 26 H 1.09000 * 109.47365 * 305.53666 * 1 2 3 27 27 H 1.09002 * 109.47168 * 65.53120 * 1 2 3 28 28 H 1.08998 * 109.47148 * 185.53438 * 1 2 3 29 29 H 1.08997 * 109.56827 * 176.09271 * 5 3 2 30 30 H 1.09004 * 109.56603 * 55.73733 * 5 3 2 31 31 H 1.09000 * 109.46355 * 60.00386 * 9 8 6 32 32 H 1.08999 * 109.46615 * 300.00542 * 9 8 6 33 33 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 34 34 H 1.08995 * 109.56733 * 65.80520 * 18 6 5 35 35 H 1.09000 * 109.57333 * 186.16860 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4831 2.0391 -0.7040 5 6 3.5075 1.2985 -0.2965 6 6 4.1937 0.5446 0.8463 7 1 5.2421 0.3837 0.5954 8 8 4.1050 1.3165 2.0456 9 6 5.1959 2.2195 2.2377 10 6 5.0002 2.9768 3.5257 11 1 4.1297 2.7879 4.1364 12 6 5.9321 3.9118 3.9241 13 7 6.9889 4.1464 3.1773 14 14 5.6892 4.8511 5.5204 15 1 5.6338 3.8939 6.6544 16 1 6.8229 5.7892 5.7201 17 1 4.4182 5.6163 5.4560 18 6 3.5075 -0.8077 1.0591 19 6 2.0019 -0.5749 1.2637 20 1 1.4829 -1.4850 1.5644 21 6 1.8355 0.5620 2.2982 22 1 2.3451 0.4601 3.2564 23 8 0.6886 1.4069 2.1858 24 6 1.8354 1.8594 1.4632 25 1 2.3571 2.7626 1.7795 26 1 -0.3634 0.5973 0.8362 27 1 -0.3633 0.4257 -0.9354 28 1 -0.3633 -1.0229 0.0991 29 1 3.9249 2.3023 -0.3741 30 1 3.6637 0.7628 -1.2329 31 1 5.2368 2.9220 1.4053 32 1 6.1286 1.6574 2.2851 33 1 7.1148 3.6588 2.3482 34 1 3.6637 -1.4380 0.1837 35 1 3.9248 -1.2942 1.9407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:07 Heat of formation + Delta-G solvation = -23.321174 kcal Electronic energy + Delta-G solvation = -18466.658080 eV Core-core repulsion = 15660.018356 eV Total energy + Delta-G solvation = -2806.639724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.91010 -37.61768 -35.82325 -33.22806 -31.83127 -31.05445 -27.69138 -26.58576 -24.53977 -23.94839 -22.65737 -21.82334 -20.36358 -19.12472 -17.17137 -16.62020 -15.96640 -15.23766 -15.17455 -14.77260 -14.26911 -13.78368 -13.34618 -12.98503 -12.81224 -12.48148 -12.37063 -12.28526 -11.93172 -11.47881 -11.43712 -10.99591 -10.92487 -10.79847 -10.66356 -10.47028 -10.28049 -10.13798 -9.17169 -8.70607 -8.67892 -8.23805 -8.02918 -6.51101 -4.20960 3.39949 3.41466 3.60338 3.80932 3.84632 4.33374 4.38951 4.68516 4.89537 4.99531 5.18217 5.23741 5.25198 5.26600 5.38849 5.42978 5.65489 5.80406 5.85214 5.87635 6.00469 6.04746 6.13045 6.21400 6.27949 6.31577 6.37541 6.51915 6.73804 6.88024 7.08522 7.09964 7.83244 8.12423 8.57310 8.74847 9.49773 10.88927 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037550 B = 0.007495 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.486660 B = 3734.686070 C = 4053.956719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.507 5.507 3 C 0.081 3.919 4 H 0.095 0.905 5 C -0.122 4.122 6 C 0.081 3.919 7 H 0.056 0.944 8 O -0.371 6.371 9 C 0.181 3.819 10 C -0.597 4.597 11 H 0.058 0.942 12 C 0.019 3.981 13 N -0.909 5.909 14 Si 1.075 2.925 15 H -0.286 1.286 16 H -0.281 1.281 17 H -0.286 1.286 18 C -0.097 4.097 19 C 0.078 3.922 20 H 0.095 0.905 21 C -0.031 4.031 22 H 0.147 0.853 23 O -0.351 6.351 24 C -0.023 4.023 25 H 0.152 0.848 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.079 0.921 31 H -0.005 1.005 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.084 0.916 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -8.357 -6.528 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.230 5.230 3 C -0.028 4.028 4 H 0.113 0.887 5 C -0.161 4.161 6 C 0.022 3.978 7 H 0.074 0.926 8 O -0.291 6.291 9 C 0.106 3.894 10 C -0.635 4.635 11 H 0.076 0.924 12 C -0.185 4.185 13 N -0.545 5.545 14 Si 0.902 3.098 15 H -0.212 1.212 16 H -0.206 1.206 17 H -0.213 1.213 18 C -0.135 4.135 19 C -0.031 4.031 20 H 0.113 0.887 21 C -0.089 4.089 22 H 0.164 0.836 23 O -0.272 6.272 24 C -0.081 4.081 25 H 0.169 0.831 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.012 0.988 32 H 0.011 0.989 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.841 -7.475 -5.834 12.304 hybrid contribution -0.831 -0.604 -0.426 1.112 sum -8.672 -8.079 -6.259 13.403 Atomic orbital electron populations 1.22792 0.88212 1.02137 1.02454 1.65523 1.08586 1.15295 1.33555 1.22798 0.96619 0.89448 0.93972 0.88735 1.22104 0.92970 1.01762 0.99222 1.21947 0.97836 0.91061 0.86957 0.92550 1.88178 1.46997 1.55014 1.38896 1.20335 0.84773 0.87542 0.96736 1.21866 1.10881 1.24091 1.06645 0.92359 1.25871 0.92599 0.96108 1.03894 1.70805 1.27922 1.41737 1.14063 0.83458 0.76017 0.76120 0.74221 1.21250 1.20616 1.21252 1.21729 0.92546 0.96658 1.02556 1.22847 0.96621 0.96400 0.87271 0.88676 1.25187 0.91288 0.90588 1.01859 0.83614 1.91395 1.22239 1.44431 1.69142 1.25354 0.90511 1.00345 0.91864 0.83116 0.91787 0.91960 0.91990 0.90789 0.90216 0.98759 0.98880 0.92258 0.89775 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.46 60.06 0.57 0.47 16 2 N -0.51 -7.39 5.29 -221.10 -1.17 -8.56 16 3 C 0.08 1.25 3.67 -65.49 -0.24 1.01 16 4 H 0.09 1.36 8.11 -51.93 -0.42 0.93 16 5 C -0.12 -1.87 5.57 -26.29 -0.15 -2.01 16 6 C 0.08 1.35 2.91 -26.59 -0.08 1.27 16 7 H 0.06 0.94 7.78 -51.93 -0.40 0.54 16 8 O -0.37 -7.79 5.04 -35.23 -0.18 -7.97 16 9 C 0.18 4.52 4.81 36.00 0.17 4.70 16 10 C -0.60 -16.77 9.43 -34.44 -0.32 -17.10 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 13 N -0.91 -27.13 13.65 55.43 0.76 -26.37 16 14 Si 1.07 25.05 29.90 -169.99 -5.08 19.96 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.10 -1.37 5.61 -26.29 -0.15 -1.52 16 19 C 0.08 1.14 3.67 -65.49 -0.24 0.90 16 20 H 0.10 1.25 8.11 -51.93 -0.42 0.83 16 21 C -0.03 -0.56 5.81 -25.21 -0.15 -0.70 16 22 H 0.15 2.76 7.66 -51.93 -0.40 2.36 16 23 O -0.35 -6.78 11.43 -35.23 -0.40 -7.18 16 24 C -0.02 -0.42 5.84 -25.21 -0.15 -0.57 16 25 H 0.15 3.14 7.60 -51.93 -0.39 2.74 16 26 H 0.06 1.00 5.14 -51.93 -0.27 0.73 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.19 7.75 -51.93 -0.40 0.79 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H -0.01 -0.13 7.61 -51.93 -0.40 -0.53 16 32 H -0.01 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.27 7.89 7.22 -40.82 -0.29 7.59 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 272.34 15.07 4.10 4.10 Total: -1.00 -30.11 272.34 -7.93 -38.04 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.13 Total: 1.08 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.83 Total: -13.11 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.41 Total: -34.93 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.58 Total: -15.15 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.11 -7.93 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.718 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds