Wall clock time and date at job start Sun Mar 29 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48720 * 110.99719 * 2 1 4 4 H 1.08998 * 112.75050 * 315.54664 * 3 2 1 5 5 C 1.53711 * 107.23609 * 191.65092 * 3 2 1 6 6 C 1.53135 * 108.89219 * 295.91727 * 5 3 2 7 7 H 1.09001 * 109.38809 * 174.06754 * 6 5 3 8 8 O 1.42898 * 109.42440 * 293.93247 * 6 5 3 9 9 C 1.42909 * 114.00197 * 270.26080 * 8 6 5 10 10 C 1.50696 * 109.47070 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 C 1.53130 * 109.73220 * 54.01164 * 6 5 3 19 19 C 1.48709 * 110.99798 * 114.46325 * 2 1 3 20 20 H 1.08996 * 112.74836 * 44.44547 * 19 2 1 21 21 C 1.54611 * 104.22619 * 282.48754 * 19 2 1 22 22 H 1.09004 * 117.97759 * 192.62456 * 21 19 2 23 23 O 1.42899 * 117.93785 * 35.38102 * 21 19 2 24 24 C 1.42904 * 65.34562 * 269.74693 * 23 21 19 25 25 H 1.08991 * 119.98329 * 248.26709 * 24 23 21 26 26 H 1.09000 * 109.47365 * 305.53666 * 1 2 3 27 27 H 1.09002 * 109.47168 * 65.53120 * 1 2 3 28 28 H 1.08998 * 109.47148 * 185.53438 * 1 2 3 29 29 H 1.08997 * 109.56827 * 176.09271 * 5 3 2 30 30 H 1.09004 * 109.56603 * 55.73733 * 5 3 2 31 31 H 1.09000 * 109.46355 * 60.00386 * 9 8 6 32 32 H 1.08999 * 109.46615 * 300.00542 * 9 8 6 33 33 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 34 34 H 1.08995 * 109.56733 * 65.80520 * 18 6 5 35 35 H 1.09000 * 109.57333 * 186.16860 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4831 2.0391 -0.7040 5 6 3.5075 1.2985 -0.2965 6 6 4.1937 0.5446 0.8463 7 1 5.2421 0.3837 0.5954 8 8 4.1050 1.3165 2.0456 9 6 5.1959 2.2195 2.2377 10 6 5.0002 2.9768 3.5257 11 1 4.1297 2.7879 4.1364 12 6 5.9321 3.9118 3.9241 13 7 6.9889 4.1464 3.1773 14 14 5.6892 4.8511 5.5204 15 1 5.6338 3.8939 6.6544 16 1 6.8229 5.7892 5.7201 17 1 4.4182 5.6163 5.4560 18 6 3.5075 -0.8077 1.0591 19 6 2.0019 -0.5749 1.2637 20 1 1.4829 -1.4850 1.5644 21 6 1.8355 0.5620 2.2982 22 1 2.3451 0.4601 3.2564 23 8 0.6886 1.4069 2.1858 24 6 1.8354 1.8594 1.4632 25 1 2.3571 2.7626 1.7795 26 1 -0.3634 0.5973 0.8362 27 1 -0.3633 0.4257 -0.9354 28 1 -0.3633 -1.0229 0.0991 29 1 3.9249 2.3023 -0.3741 30 1 3.6637 0.7628 -1.2329 31 1 5.2368 2.9220 1.4053 32 1 6.1286 1.6574 2.2851 33 1 7.1148 3.6588 2.3482 34 1 3.6637 -1.4380 0.1837 35 1 3.9248 -1.2942 1.9407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:07 Heat of formation + Delta-G solvation = -44.727143 kcal Electronic energy + Delta-G solvation = -18467.586312 eV Core-core repulsion = 15660.018356 eV Total energy + Delta-G solvation = -2807.567956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.25779 -39.16261 -37.29295 -35.24820 -33.25583 -32.28793 -29.12315 -28.53139 -25.83289 -25.25235 -24.67251 -23.16292 -21.71843 -20.47921 -19.21632 -18.03229 -17.45630 -16.77527 -16.54973 -16.10656 -15.83653 -15.64361 -14.90441 -14.53984 -14.24316 -14.03064 -13.79505 -13.53961 -13.39457 -12.98377 -12.71591 -12.61247 -12.55042 -12.26883 -12.11196 -11.95835 -11.78006 -11.67646 -10.85166 -10.77660 -10.47677 -9.97742 -9.32421 -8.79589 -6.50338 1.50178 1.57422 1.78180 2.43382 2.46353 2.54578 3.05334 3.05778 3.14800 3.52722 3.74497 3.88897 3.94300 4.05663 4.15621 4.19721 4.40606 4.54213 4.58694 4.68650 4.71260 4.80467 4.82215 4.94157 4.94762 4.97138 5.01462 5.10348 5.15825 5.19702 5.66102 5.73574 5.93294 5.98527 6.39073 6.74600 7.29276 8.61535 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037550 B = 0.007495 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.486660 B = 3734.686070 C = 4053.956719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.496 5.496 3 C 0.089 3.911 4 H 0.109 0.891 5 C -0.117 4.117 6 C 0.066 3.934 7 H 0.058 0.942 8 O -0.376 6.376 9 C 0.197 3.803 10 C -0.615 4.615 11 H 0.048 0.952 12 C -0.027 4.027 13 N -0.930 5.930 14 Si 1.119 2.881 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.273 1.273 18 C -0.089 4.089 19 C 0.085 3.915 20 H 0.121 0.879 21 C -0.034 4.034 22 H 0.126 0.874 23 O -0.367 6.367 24 C -0.035 4.035 25 H 0.116 0.884 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.109 0.891 31 H -0.018 1.018 32 H -0.022 1.022 33 H 0.257 0.743 34 H 0.116 0.884 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -9.765 -7.271 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.218 5.218 3 C -0.020 4.020 4 H 0.127 0.873 5 C -0.154 4.154 6 C 0.008 3.992 7 H 0.076 0.924 8 O -0.296 6.296 9 C 0.121 3.879 10 C -0.652 4.652 11 H 0.066 0.934 12 C -0.225 4.225 13 N -0.567 5.567 14 Si 0.939 3.061 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.198 1.198 18 C -0.127 4.127 19 C -0.024 4.024 20 H 0.139 0.861 21 C -0.092 4.092 22 H 0.144 0.856 23 O -0.289 6.289 24 C -0.093 4.093 25 H 0.134 0.866 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.000 1.000 32 H -0.005 1.005 33 H 0.067 0.933 34 H 0.134 0.866 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.721 -8.912 -6.600 14.108 hybrid contribution -0.608 -0.207 -0.220 0.679 sum -9.329 -9.120 -6.820 14.721 Atomic orbital electron populations 1.22832 0.87255 1.03105 1.02309 1.65571 1.09370 1.14023 1.32844 1.22808 0.97005 0.90299 0.91915 0.87293 1.22073 0.92480 1.01139 0.99757 1.22347 0.98810 0.92178 0.85877 0.92433 1.88180 1.45169 1.54828 1.41403 1.19895 0.85268 0.87625 0.95081 1.22208 1.10523 1.24713 1.07796 0.93371 1.27335 0.91910 0.96821 1.06452 1.70921 1.29005 1.42448 1.14298 0.82907 0.76551 0.75523 0.71079 1.19429 1.20198 1.19831 1.21758 0.91624 0.95063 1.04229 1.22964 0.97360 0.95972 0.86089 0.86143 1.25392 0.90315 0.91696 1.01777 0.85631 1.91381 1.22516 1.45183 1.69772 1.25315 0.90260 0.99623 0.94125 0.86639 0.94076 0.90424 0.90006 0.92340 0.87225 1.00042 1.00452 0.93338 0.86593 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.46 127.69 1.21 1.04 16 2 N -0.50 -12.86 5.29 -853.43 -4.51 -17.38 16 3 C 0.09 2.61 3.67 45.35 0.17 2.78 16 4 H 0.11 2.90 8.11 -2.39 -0.02 2.88 16 5 C -0.12 -3.36 5.57 30.88 0.17 -3.19 16 6 C 0.07 2.13 2.91 30.68 0.09 2.22 16 7 H 0.06 1.86 7.78 -2.39 -0.02 1.84 16 8 O -0.38 -16.07 5.04 -148.98 -0.75 -16.82 16 9 C 0.20 10.17 4.81 71.23 0.34 10.51 16 10 C -0.61 -35.46 9.43 25.60 0.24 -35.22 16 11 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 12 C -0.03 -1.56 5.46 84.66 0.46 -1.10 16 13 N -0.93 -56.42 13.65 21.45 0.29 -56.13 16 14 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 C -0.09 -2.27 5.61 30.88 0.17 -2.09 16 19 C 0.09 2.28 3.67 45.35 0.17 2.44 16 20 H 0.12 2.70 8.11 -2.39 -0.02 2.68 16 21 C -0.03 -1.20 5.81 31.58 0.18 -1.02 16 22 H 0.13 4.87 7.66 -2.38 -0.02 4.85 16 23 O -0.37 -14.27 11.43 -148.98 -1.70 -15.97 16 24 C -0.04 -1.32 5.84 31.58 0.18 -1.13 16 25 H 0.12 5.09 7.60 -2.39 -0.02 5.08 16 26 H 0.04 1.20 5.14 -2.39 -0.01 1.19 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.87 7.75 -2.39 -0.02 1.85 16 30 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 31 H -0.02 -0.97 7.61 -2.39 -0.02 -0.99 16 32 H -0.02 -1.20 7.96 -2.39 -0.02 -1.22 16 33 H 0.26 15.65 7.22 -92.71 -0.67 14.98 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.63 272.34 -0.06 -65.69 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.17 Total: 12.91 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 3.39 Total: -24.75 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -4.22 Total: -73.51 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -2.45 Total: -32.79 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -65.63 -0.06 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.964 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds