Wall clock time and date at job start Sun Mar 29 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47437 * 2 1 4 4 C 1.53000 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46726 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47043 * 179.97438 * 5 4 3 7 7 N 1.30272 * 126.28028 * 89.97438 * 6 5 4 8 8 N 1.28674 * 109.38187 * 180.02562 * 7 6 5 9 9 C 1.30276 * 109.37873 * 0.02562 * 8 7 6 10 10 C 1.50698 * 126.28250 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46939 * 195.02200 * 10 9 8 12 12 N 1.46897 * 109.46815 * 315.01853 * 10 9 8 13 13 C 1.50692 * 109.47287 * 75.01916 * 10 9 8 14 14 H 1.08002 * 120.00361 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99988 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99819 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 119.99785 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47097 * 89.99849 * 17 15 13 19 19 H 1.48504 * 109.46978 * 209.99729 * 17 15 13 20 20 H 1.48497 * 109.47152 * 329.99686 * 17 15 13 21 21 O 1.34364 * 126.28208 * 269.97587 * 6 5 4 22 22 H 1.09005 * 109.46759 * 300.00166 * 1 2 3 23 23 H 1.09004 * 109.47118 * 60.00232 * 1 2 3 24 24 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47277 * 239.99747 * 2 1 3 26 26 H 1.09004 * 109.47118 * 119.99767 * 2 1 3 27 27 H 1.09001 * 109.46652 * 59.99794 * 3 2 1 28 28 H 1.09004 * 109.46776 * 299.99977 * 3 2 1 29 29 H 1.08992 * 109.47029 * 60.00174 * 4 3 2 30 30 H 1.08998 * 109.46882 * 299.99737 * 4 3 2 31 31 H 1.09006 * 109.47163 * 59.99801 * 5 4 3 32 32 H 1.09004 * 109.47043 * 299.99937 * 5 4 3 33 33 H 1.00900 * 111.00154 * 59.99909 * 12 10 9 34 34 H 1.00906 * 111.00198 * 183.95682 * 12 10 9 35 35 H 0.97006 * 119.99568 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5871 2.8849 0.0013 7 7 6.3588 2.8836 -1.0482 8 7 7.5897 2.8835 -0.6732 9 6 7.6450 2.8841 0.6284 10 6 8.8965 2.8837 1.4678 11 1 8.6452 2.6180 2.4947 12 7 9.8481 1.9038 0.9275 13 6 9.5192 4.2557 1.4419 14 1 9.0549 5.0489 0.8747 15 6 10.6812 4.4988 2.1433 16 7 11.2243 5.6962 2.1211 17 14 11.4839 3.1271 3.1249 18 1 12.4501 2.4010 2.2622 19 1 12.1989 3.7057 4.2908 20 1 10.4407 2.1842 3.6023 21 8 6.3813 2.8861 1.0851 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8891 30 1 3.9330 0.9287 0.8909 31 1 3.7163 3.3993 0.8896 32 1 3.7171 3.3982 -0.8905 33 1 10.0970 2.1281 -0.0243 34 1 10.6694 1.8379 1.5100 35 1 12.0416 5.8673 2.6148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217716782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:33 Heat of formation + Delta-G solvation = 12.935111 kcal Electronic energy + Delta-G solvation = -16598.913251 eV Core-core repulsion = 13826.138469 eV Total energy + Delta-G solvation = -2772.774782 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.49778 -36.64065 -35.50960 -35.35788 -33.20809 -32.01479 -29.81634 -27.22729 -26.28054 -23.83050 -23.07184 -21.30004 -21.18882 -20.80237 -17.41812 -16.78647 -16.28981 -15.99577 -15.53361 -14.82942 -14.43241 -14.10031 -13.79039 -13.60010 -13.44700 -12.70776 -12.38500 -12.05797 -12.03648 -11.71646 -11.56367 -11.27009 -11.17527 -11.12866 -11.09580 -10.96881 -10.72159 -10.59484 -10.14641 -9.80908 -8.96604 -8.83928 -7.83216 -6.40743 -4.48659 1.86406 2.87251 3.03163 3.12102 3.14774 3.17409 4.06310 4.30229 4.63181 4.68245 4.85313 4.87578 4.92833 5.14491 5.22650 5.29354 5.47270 5.52574 5.60453 5.63682 5.65640 5.76637 5.82708 5.96613 5.97716 6.11373 6.15291 6.17813 6.25211 6.74609 7.08699 7.76427 8.04415 8.24283 8.63455 9.04856 9.12093 10.71166 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048559 B = 0.004402 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.474074 B = 6359.135066 C = 6513.639866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.015 4.015 6 C 0.126 3.874 7 N -0.289 5.289 8 N -0.298 5.298 9 C 0.232 3.768 10 C 0.270 3.730 11 H 0.071 0.929 12 N -0.844 5.844 13 C -0.555 4.555 14 H 0.081 0.919 15 C 0.082 3.918 16 N -0.877 5.877 17 Si 0.871 3.129 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.257 1.257 21 O -0.230 6.230 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.348 0.652 34 H 0.329 0.671 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 -8.974 -0.930 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.053 4.053 6 C -0.086 4.086 7 N -0.136 5.136 8 N -0.143 5.143 9 C 0.021 3.979 10 C 0.159 3.841 11 H 0.089 0.911 12 N -0.381 5.381 13 C -0.595 4.595 14 H 0.099 0.901 15 C -0.124 4.124 16 N -0.512 5.512 17 Si 0.699 3.301 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.182 1.182 21 O -0.109 6.109 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.174 -9.381 -1.974 18.802 hybrid contribution 0.885 0.379 1.652 1.912 sum -15.288 -9.002 -0.322 17.745 Atomic orbital electron populations 1.21778 0.95921 1.01517 1.01787 1.21534 0.95752 0.96856 1.02250 1.21602 0.94400 0.97110 1.02441 1.21635 0.95697 0.94966 1.03380 1.20037 0.81009 0.99220 1.05080 1.27647 0.97165 1.03310 0.80462 1.74258 0.96744 1.16529 1.26089 1.74308 1.10792 1.19440 1.09749 1.28392 0.84464 0.93647 0.91374 1.17909 0.81659 0.92936 0.91590 0.91135 1.59383 1.18032 1.52702 1.07989 1.21329 1.10038 0.94778 1.33342 0.90114 1.24919 0.96312 0.95934 0.95259 1.69857 1.20011 1.20648 1.40693 0.87029 0.80497 0.82098 0.80514 1.19465 1.21056 1.18155 1.84750 1.18030 1.69900 1.38201 0.92765 0.92738 0.92888 0.91901 0.91956 0.91649 0.91544 0.90946 0.91349 0.88998 0.87746 0.83859 0.85242 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 4 C -0.12 -1.23 5.20 -26.73 -0.14 -1.37 16 5 C -0.01 -0.18 5.84 -27.88 -0.16 -0.34 16 6 C 0.13 2.31 7.73 -12.94 -0.10 2.21 16 7 N -0.29 -6.14 12.22 32.55 0.40 -5.75 16 8 N -0.30 -7.07 12.09 32.55 0.39 -6.67 16 9 C 0.23 5.44 7.24 -12.94 -0.09 5.35 16 10 C 0.27 6.50 2.78 -70.02 -0.20 6.31 16 11 H 0.07 1.66 7.20 -51.93 -0.37 1.28 16 12 N -0.84 -18.80 9.14 -6.65 -0.06 -18.86 16 13 C -0.55 -15.30 9.29 -34.44 -0.32 -15.62 16 14 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.88 -25.54 13.96 55.43 0.77 -24.76 16 17 Si 0.87 19.71 24.61 -169.99 -4.18 15.53 16 18 H -0.27 -5.80 7.01 56.52 0.40 -5.40 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 21 O -0.23 -4.83 10.87 5.37 0.06 -4.77 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.35 7.73 8.87 -39.29 -0.35 7.39 16 34 H 0.33 7.14 4.30 -39.29 -0.17 6.97 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -30.69 294.40 -4.36 -35.05 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.13 Total: 10.00 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.04 Total: -4.20 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 1.50 Total: -56.04 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: 0.06 Total: -4.77 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.18 Total: 15.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.69 -4.36 -35.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217716782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.984 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds