Wall clock time and date at job start Sun Mar 29 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47437 * 2 1 4 4 C 1.53000 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46726 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47043 * 179.97438 * 5 4 3 7 7 N 1.30272 * 126.28028 * 89.97438 * 6 5 4 8 8 N 1.28674 * 109.38187 * 180.02562 * 7 6 5 9 9 C 1.30276 * 109.37873 * 0.02562 * 8 7 6 10 10 C 1.50698 * 126.28250 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46939 * 195.02200 * 10 9 8 12 12 N 1.46897 * 109.46815 * 315.01853 * 10 9 8 13 13 C 1.50692 * 109.47287 * 75.01916 * 10 9 8 14 14 H 1.08002 * 120.00361 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99988 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99819 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 119.99785 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47097 * 89.99849 * 17 15 13 19 19 H 1.48504 * 109.46978 * 209.99729 * 17 15 13 20 20 H 1.48497 * 109.47152 * 329.99686 * 17 15 13 21 21 O 1.34364 * 126.28208 * 269.97587 * 6 5 4 22 22 H 1.09005 * 109.46759 * 300.00166 * 1 2 3 23 23 H 1.09004 * 109.47118 * 60.00232 * 1 2 3 24 24 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47277 * 239.99747 * 2 1 3 26 26 H 1.09004 * 109.47118 * 119.99767 * 2 1 3 27 27 H 1.09001 * 109.46652 * 59.99794 * 3 2 1 28 28 H 1.09004 * 109.46776 * 299.99977 * 3 2 1 29 29 H 1.08992 * 109.47029 * 60.00174 * 4 3 2 30 30 H 1.08998 * 109.46882 * 299.99737 * 4 3 2 31 31 H 1.09006 * 109.47163 * 59.99801 * 5 4 3 32 32 H 1.09004 * 109.47043 * 299.99937 * 5 4 3 33 33 H 1.00900 * 111.00154 * 59.99909 * 12 10 9 34 34 H 1.00906 * 111.00198 * 183.95682 * 12 10 9 35 35 H 0.97006 * 119.99568 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5871 2.8849 0.0013 7 7 6.3588 2.8836 -1.0482 8 7 7.5897 2.8835 -0.6732 9 6 7.6450 2.8841 0.6284 10 6 8.8965 2.8837 1.4678 11 1 8.6452 2.6180 2.4947 12 7 9.8481 1.9038 0.9275 13 6 9.5192 4.2557 1.4419 14 1 9.0549 5.0489 0.8747 15 6 10.6812 4.4988 2.1433 16 7 11.2243 5.6962 2.1211 17 14 11.4839 3.1271 3.1249 18 1 12.4501 2.4010 2.2622 19 1 12.1989 3.7057 4.2908 20 1 10.4407 2.1842 3.6023 21 8 6.3813 2.8861 1.0851 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8891 30 1 3.9330 0.9287 0.8909 31 1 3.7163 3.3993 0.8896 32 1 3.7171 3.3982 -0.8905 33 1 10.0970 2.1281 -0.0243 34 1 10.6694 1.8379 1.5100 35 1 12.0416 5.8673 2.6148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217716782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:33 Heat of formation + Delta-G solvation = -13.149521 kcal Electronic energy + Delta-G solvation = -16600.044365 eV Core-core repulsion = 13826.138469 eV Total energy + Delta-G solvation = -2773.905897 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.16423 -37.61710 -37.16911 -37.06826 -34.38212 -33.85793 -31.16970 -28.74649 -27.74519 -25.67675 -24.20323 -22.63199 -22.45274 -21.87014 -19.41170 -18.50772 -18.00102 -17.29942 -16.68141 -16.33406 -16.06909 -15.59818 -14.85459 -14.61454 -14.42872 -14.19373 -13.93007 -13.58266 -13.38156 -13.00908 -12.91187 -12.85823 -12.74310 -12.43298 -11.99812 -11.90526 -11.79945 -11.76818 -11.66397 -11.35569 -11.01289 -10.48999 -9.70748 -8.51086 -6.66979 0.24754 1.25811 1.29987 1.32609 1.41612 1.43425 2.14895 2.80777 2.92291 3.54918 3.76753 3.84959 3.92832 4.10283 4.13668 4.35370 4.38879 4.41800 4.46659 4.74333 4.79575 4.86521 4.91392 4.96330 5.05414 5.06142 5.10165 5.22642 5.35528 5.45944 5.53854 5.80311 6.08203 6.34108 6.45124 6.98782 7.36441 8.65073 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048559 B = 0.004402 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.474074 B = 6359.135066 C = 6513.639866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.112 4.112 5 C -0.016 4.016 6 C 0.152 3.848 7 N -0.321 5.321 8 N -0.318 5.318 9 C 0.209 3.791 10 C 0.278 3.722 11 H 0.081 0.919 12 N -0.831 5.831 13 C -0.567 4.567 14 H 0.027 0.973 15 C 0.029 3.971 16 N -0.926 5.926 17 Si 0.940 3.060 18 H -0.247 1.247 19 H -0.281 1.281 20 H -0.236 1.236 21 O -0.234 6.234 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.348 0.652 34 H 0.335 0.665 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.419 -10.650 -0.083 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.149 4.149 4 C -0.150 4.150 5 C -0.054 4.054 6 C -0.060 4.060 7 N -0.166 5.166 8 N -0.163 5.163 9 C -0.003 4.003 10 C 0.166 3.834 11 H 0.099 0.901 12 N -0.368 5.368 13 C -0.607 4.607 14 H 0.046 0.954 15 C -0.173 4.173 16 N -0.563 5.563 17 Si 0.762 3.238 18 H -0.172 1.172 19 H -0.207 1.207 20 H -0.160 1.160 21 O -0.114 6.114 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.475 -11.069 -1.159 20.718 hybrid contribution 1.136 0.983 1.311 1.994 sum -16.339 -10.086 0.152 19.202 Atomic orbital electron populations 1.21766 0.95041 1.01897 1.02188 1.21544 0.96522 0.96598 1.01939 1.21564 0.92175 0.97573 1.03540 1.21594 0.97496 0.93359 1.02586 1.20542 0.76556 1.00976 1.07361 1.28973 0.99024 0.98990 0.79025 1.74200 0.96271 1.19003 1.27174 1.74227 1.12416 1.19547 1.10113 1.28181 0.85224 0.95541 0.91394 1.17679 0.82224 0.91100 0.92404 0.90102 1.59350 1.18047 1.51410 1.07990 1.21396 1.10683 0.95464 1.33117 0.95409 1.25870 0.96566 0.98746 0.96097 1.70003 1.20862 1.23351 1.42035 0.85927 0.80083 0.78856 0.78927 1.17161 1.20743 1.15984 1.84754 1.17505 1.70061 1.39047 0.92351 0.92343 0.92603 0.92312 0.92289 0.90498 0.90495 0.91997 0.92016 0.86478 0.85614 0.83919 0.84651 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.70 5.93 30.59 0.18 -1.52 16 3 C -0.11 -1.45 5.21 30.59 0.16 -1.29 16 4 C -0.11 -2.07 5.20 30.59 0.16 -1.91 16 5 C -0.02 -0.35 5.84 29.85 0.17 -0.17 16 6 C 0.15 5.39 7.73 88.34 0.68 6.07 16 7 N -0.32 -13.61 12.22 -165.50 -2.02 -15.63 16 8 N -0.32 -15.29 12.09 -165.50 -2.00 -17.29 16 9 C 0.21 9.85 7.24 88.34 0.64 10.49 16 10 C 0.28 13.29 2.78 43.42 0.12 13.41 16 11 H 0.08 3.69 7.20 -2.38 -0.02 3.67 16 12 N -0.83 -35.95 9.14 -174.97 -1.60 -37.55 16 13 C -0.57 -32.09 9.29 25.60 0.24 -31.85 16 14 H 0.03 1.81 7.98 -2.91 -0.02 1.79 16 15 C 0.03 1.59 5.47 84.66 0.46 2.06 16 16 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 17 Si 0.94 39.67 24.61 68.60 1.69 41.35 16 18 H -0.25 -9.57 7.01 99.48 0.70 -8.87 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 21 O -0.23 -9.72 10.87 -3.71 -0.04 -9.76 16 22 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 23 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.13 2.24 8.14 -2.38 -0.02 2.23 16 33 H 0.35 15.29 8.87 -89.69 -0.80 14.50 16 34 H 0.33 13.66 4.30 -89.69 -0.39 13.27 16 35 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -68.23 294.40 -0.29 -68.53 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.15 Total: 30.93 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 3.53 Total: -5.68 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -5.32 Total: -125.36 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.04 Total: -9.76 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.69 Total: 41.35 kcal Total: -68.23 -0.29 -68.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217716782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.376 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds