Wall clock time and date at job start Sun Mar 29 2020 22:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 N 1.46894 * 109.47282 * 181.21066 * 3 2 1 5 5 C 1.46900 * 110.99920 * 56.65592 * 4 3 2 6 6 C 1.50703 * 109.47215 * 66.04674 * 5 4 3 7 7 H 1.08001 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47221 * 90.00183 * 10 8 6 12 12 H 1.48507 * 109.46902 * 210.00190 * 10 8 6 13 13 H 1.48499 * 109.47087 * 329.99939 * 10 8 6 14 14 C 1.46898 * 111.00385 * 292.70240 * 4 3 2 15 15 C 1.50699 * 109.47145 * 287.95530 * 14 4 3 16 16 N 1.29956 * 125.30350 * 276.74659 * 15 14 4 17 17 O 1.41875 * 107.41679 * 179.89026 * 16 15 14 18 18 N 1.41876 * 106.38432 * 0.36606 * 17 16 15 19 19 C 1.29948 * 107.41706 * 359.77830 * 18 17 16 20 20 C 1.50699 * 125.30502 * 179.97438 * 19 18 17 21 21 H 1.08997 * 109.47661 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47443 * 300.00995 * 1 2 3 23 23 H 1.09007 * 109.46867 * 60.00295 * 1 2 3 24 24 H 1.08996 * 109.47693 * 239.99494 * 2 1 3 25 25 H 1.09007 * 109.46867 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.46776 * 61.20583 * 3 2 1 27 27 H 1.09005 * 109.46477 * 301.21228 * 3 2 1 28 28 H 1.08999 * 109.47441 * 306.04649 * 5 4 3 29 29 H 1.09003 * 109.47074 * 186.04447 * 5 4 3 30 30 H 0.97001 * 119.99920 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.46803 * 47.94820 * 14 4 3 32 32 H 1.08996 * 109.47319 * 167.94880 * 14 4 3 33 33 H 1.08998 * 109.47289 * 275.68253 * 20 19 18 34 34 H 1.09002 * 109.47015 * 35.68341 * 20 19 18 35 35 H 1.09004 * 109.47032 * 155.67504 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4426 -0.0293 5 6 4.0121 0.6969 -1.1905 6 6 3.6283 1.4191 -2.4562 7 1 3.0662 2.3398 -2.4033 8 6 3.9947 0.9046 -3.6818 9 7 4.6787 -0.2168 -3.7462 10 14 3.5183 1.7995 -5.2507 11 1 4.5872 2.7639 -5.6146 12 1 3.3450 0.8150 -6.3490 13 1 2.2439 2.5308 -5.0359 14 6 4.0603 0.9044 1.2214 15 6 3.8535 1.9020 2.3319 16 7 4.6258 2.9163 2.5837 17 8 4.0795 3.5990 3.7010 18 7 2.9178 2.8787 4.0812 19 6 2.7959 1.8769 3.2625 20 6 1.6953 0.8482 3.3026 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6945 1.9500 0.9006 27 1 1.6590 1.9625 -0.8790 28 1 3.5776 -0.3028 -1.1966 29 1 5.0978 0.6208 -1.1306 30 1 4.9369 -0.5787 -4.6084 31 1 3.5528 -0.0274 1.4709 32 1 5.1264 0.7154 1.0966 33 1 1.9537 0.0675 4.0180 34 1 0.7633 1.3250 3.6060 35 1 1.5730 0.4083 2.3129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248858954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:52 Heat of formation + Delta-G solvation = 88.410269 kcal Electronic energy + Delta-G solvation = -17551.127360 eV Core-core repulsion = 14781.625427 eV Total energy + Delta-G solvation = -2769.501934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.32269 -37.84114 -34.12488 -33.28913 -32.87125 -31.67375 -28.78034 -27.91160 -26.55508 -24.40832 -22.34491 -22.08348 -20.65228 -19.36100 -16.80594 -16.29381 -16.13610 -15.28528 -14.96717 -14.61402 -14.22850 -13.97021 -13.75310 -13.41401 -13.26411 -12.70019 -12.30499 -12.05922 -11.64194 -11.58522 -11.41326 -11.29046 -11.10169 -11.01335 -10.76608 -10.64236 -10.52879 -10.47891 -10.04615 -9.88618 -9.33410 -8.50989 -7.44362 -6.10955 -4.12093 0.71725 2.13062 2.86319 3.28323 3.32883 3.34884 3.37902 4.00885 4.36815 4.75889 4.89474 4.99345 5.21024 5.25651 5.29582 5.31797 5.40112 5.48205 5.66402 5.70480 5.77072 5.85512 5.92751 6.09830 6.22082 6.35453 6.55346 6.77931 7.08008 7.16621 7.22281 7.65681 7.90074 8.00811 8.37007 8.94362 9.52418 10.99754 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.006797 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.335611 B = 4118.367846 C = 4640.684428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.061 3.939 4 N -0.527 5.527 5 C 0.190 3.810 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.107 3.893 15 C 0.093 3.907 16 N -0.256 5.256 17 O 0.012 5.988 18 N -0.291 5.291 19 C 0.082 3.918 20 C -0.106 4.106 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.007 0.993 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -2.099 10.830 12.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C -0.068 4.068 4 N -0.251 5.251 5 C 0.066 3.934 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.022 4.022 15 C -0.091 4.091 16 N -0.001 5.001 17 O -0.127 6.127 18 N -0.037 5.037 19 C -0.100 4.100 20 C -0.163 4.163 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.052 -0.520 11.289 12.819 hybrid contribution -0.660 -0.928 -1.165 1.629 sum -6.712 -1.448 10.124 12.232 Atomic orbital electron populations 1.21682 0.96089 1.01054 1.01489 1.22289 0.95950 0.99897 1.02636 1.22175 0.88059 0.94954 1.01577 1.62341 1.06682 1.55210 1.00902 1.19881 0.95699 0.92060 0.85730 1.21079 1.35152 1.08630 0.89707 0.91880 1.24944 0.95212 0.95030 0.99178 1.69939 1.38579 1.19833 1.25340 0.86509 0.78976 0.79353 0.82661 1.20603 1.21298 1.19862 1.20769 1.02851 0.91018 0.87606 1.24743 0.91093 0.95855 0.97413 1.80017 1.16868 1.04768 0.98424 1.93356 1.33107 1.45547 1.40708 1.79813 1.01170 1.04896 1.17792 1.24577 0.97610 0.96057 0.91800 1.20861 0.94243 0.95325 1.05895 0.93223 0.93462 0.92461 0.89455 0.92811 0.93334 0.89527 0.97534 0.95008 0.92834 0.91757 0.88330 0.88831 0.89280 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.87 37.16 0.37 -1.41 16 2 C -0.17 -2.50 4.40 -26.73 -0.12 -2.61 16 3 C 0.06 1.03 4.61 -3.82 -0.02 1.02 16 4 N -0.53 -10.32 4.65 -237.52 -1.10 -11.42 16 5 C 0.19 4.49 4.41 -4.97 -0.02 4.46 16 6 C -0.51 -13.39 8.56 -34.44 -0.29 -13.69 16 7 H 0.06 1.68 7.10 -52.49 -0.37 1.31 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 10 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 14 C 0.11 1.73 5.13 -4.98 -0.03 1.70 16 15 C 0.09 1.50 6.07 -82.38 -0.50 1.00 16 16 N -0.26 -4.68 12.98 33.74 0.44 -4.24 16 17 O 0.01 0.22 13.71 12.02 0.16 0.38 16 18 N -0.29 -4.61 12.98 33.74 0.44 -4.17 16 19 C 0.08 1.14 6.47 -82.38 -0.53 0.61 16 20 C -0.11 -1.01 9.63 36.01 0.35 -0.66 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 1.58 6.15 -51.93 -0.32 1.26 16 25 H 0.05 0.68 4.74 -51.93 -0.25 0.44 16 26 H 0.05 0.74 5.67 -51.93 -0.29 0.45 16 27 H 0.09 1.66 6.95 -51.93 -0.36 1.30 16 28 H 0.01 0.17 5.89 -51.93 -0.31 -0.14 16 29 H 0.03 0.82 7.86 -51.93 -0.41 0.41 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.06 0.87 5.45 -51.93 -0.28 0.59 16 32 H 0.10 1.62 7.81 -51.93 -0.41 1.21 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.00 3.26 -51.93 -0.17 0.83 16 LS Contribution 282.96 15.07 4.26 4.26 Total: -1.00 -29.42 282.96 -5.39 -34.81 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.41 Total: -2.87 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.89 Total: -8.11 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.51 Total: -44.45 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: 0.16 Total: 0.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.42 -5.39 -34.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248858954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.217 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds