Wall clock time and date at job start Sun Mar 29 2020 22:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 N 1.46894 * 109.47282 * 181.21066 * 3 2 1 5 5 C 1.46900 * 110.99920 * 56.65592 * 4 3 2 6 6 C 1.50703 * 109.47215 * 66.04674 * 5 4 3 7 7 H 1.08001 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47221 * 90.00183 * 10 8 6 12 12 H 1.48507 * 109.46902 * 210.00190 * 10 8 6 13 13 H 1.48499 * 109.47087 * 329.99939 * 10 8 6 14 14 C 1.46898 * 111.00385 * 292.70240 * 4 3 2 15 15 C 1.50699 * 109.47145 * 287.95530 * 14 4 3 16 16 N 1.29956 * 125.30350 * 276.74659 * 15 14 4 17 17 O 1.41875 * 107.41679 * 179.89026 * 16 15 14 18 18 N 1.41876 * 106.38432 * 0.36606 * 17 16 15 19 19 C 1.29948 * 107.41706 * 359.77830 * 18 17 16 20 20 C 1.50699 * 125.30502 * 179.97438 * 19 18 17 21 21 H 1.08997 * 109.47661 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47443 * 300.00995 * 1 2 3 23 23 H 1.09007 * 109.46867 * 60.00295 * 1 2 3 24 24 H 1.08996 * 109.47693 * 239.99494 * 2 1 3 25 25 H 1.09007 * 109.46867 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.46776 * 61.20583 * 3 2 1 27 27 H 1.09005 * 109.46477 * 301.21228 * 3 2 1 28 28 H 1.08999 * 109.47441 * 306.04649 * 5 4 3 29 29 H 1.09003 * 109.47074 * 186.04447 * 5 4 3 30 30 H 0.97001 * 119.99920 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.46803 * 47.94820 * 14 4 3 32 32 H 1.08996 * 109.47319 * 167.94880 * 14 4 3 33 33 H 1.08998 * 109.47289 * 275.68253 * 20 19 18 34 34 H 1.09002 * 109.47015 * 35.68341 * 20 19 18 35 35 H 1.09004 * 109.47032 * 155.67504 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4426 -0.0293 5 6 4.0121 0.6969 -1.1905 6 6 3.6283 1.4191 -2.4562 7 1 3.0662 2.3398 -2.4033 8 6 3.9947 0.9046 -3.6818 9 7 4.6787 -0.2168 -3.7462 10 14 3.5183 1.7995 -5.2507 11 1 4.5872 2.7639 -5.6146 12 1 3.3450 0.8150 -6.3490 13 1 2.2439 2.5308 -5.0359 14 6 4.0603 0.9044 1.2214 15 6 3.8535 1.9020 2.3319 16 7 4.6258 2.9163 2.5837 17 8 4.0795 3.5990 3.7010 18 7 2.9178 2.8787 4.0812 19 6 2.7959 1.8769 3.2625 20 6 1.6953 0.8482 3.3026 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6945 1.9500 0.9006 27 1 1.6590 1.9625 -0.8790 28 1 3.5776 -0.3028 -1.1966 29 1 5.0978 0.6208 -1.1306 30 1 4.9369 -0.5787 -4.6084 31 1 3.5528 -0.0274 1.4709 32 1 5.1264 0.7154 1.0966 33 1 1.9537 0.0675 4.0180 34 1 0.7633 1.3250 3.6060 35 1 1.5730 0.4083 2.3129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248858954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:51 Heat of formation + Delta-G solvation = 67.831444 kcal Electronic energy + Delta-G solvation = -17552.019725 eV Core-core repulsion = 14781.625427 eV Total energy + Delta-G solvation = -2770.394298 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.56455 -39.30397 -35.41310 -34.70349 -34.50518 -33.08534 -29.92111 -29.44411 -27.95850 -26.04689 -23.82073 -23.33958 -21.91381 -20.77249 -18.41636 -17.87776 -17.46421 -16.84404 -16.38851 -16.13887 -15.47837 -15.29427 -15.18044 -14.50300 -14.23968 -14.15926 -13.66239 -13.30757 -13.09384 -12.91899 -12.80635 -12.74320 -12.56678 -12.43600 -12.34757 -12.14558 -11.86824 -11.80045 -11.63013 -11.31399 -11.21841 -10.56915 -8.99611 -8.18268 -6.25542 -0.52058 0.93674 1.41320 1.43139 1.52542 1.58941 2.11605 2.41457 2.82043 3.15613 3.36378 3.72251 3.88353 4.12291 4.17620 4.23558 4.39431 4.47795 4.56810 4.60192 4.67975 4.74284 4.89795 5.03333 5.10167 5.13623 5.26039 5.36567 5.50491 5.60328 5.69630 5.89700 6.05713 6.28882 6.54763 6.88402 7.42957 8.92022 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.006797 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.335611 B = 4118.367846 C = 4640.684428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.161 4.161 3 C 0.064 3.936 4 N -0.547 5.547 5 C 0.208 3.792 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.280 1.280 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.110 3.890 15 C 0.098 3.902 16 N -0.289 5.289 17 O -0.016 6.016 18 N -0.301 5.301 19 C 0.100 3.900 20 C -0.105 4.105 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -2.785 11.810 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C -0.064 4.064 4 N -0.271 5.271 5 C 0.082 3.918 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.206 1.206 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.019 4.019 15 C -0.087 4.087 16 N -0.034 5.034 17 O -0.150 6.150 18 N -0.050 5.050 19 C -0.083 4.083 20 C -0.162 4.162 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.952 -1.173 12.286 14.682 hybrid contribution -0.088 -0.744 -1.419 1.605 sum -8.040 -1.917 10.866 13.653 Atomic orbital electron populations 1.21662 0.93780 1.02309 1.02166 1.22173 0.97934 0.97762 1.02061 1.22158 0.86348 0.96593 1.01306 1.62107 1.08515 1.55365 1.01107 1.19476 0.93781 0.91890 0.86628 1.21385 1.34679 1.08413 0.91224 0.92661 1.25699 0.95252 0.95746 1.02198 1.70037 1.39690 1.21140 1.26062 0.85568 0.78754 0.78280 0.79133 1.20595 1.20662 1.19132 1.20789 1.02733 0.92238 0.86158 1.24861 0.91431 0.94976 0.97402 1.79982 1.18250 1.05942 0.99264 1.93340 1.34361 1.46466 1.40822 1.79823 1.00748 1.05722 1.18739 1.25177 0.97420 0.95889 0.89842 1.21139 0.93356 0.94841 1.06912 0.91699 0.90732 0.93887 0.93313 0.90061 0.91061 0.92348 0.98119 0.97946 0.92748 0.88312 0.89171 0.85606 0.87226 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.87 71.98 0.71 -2.31 16 2 C -0.16 -4.41 4.40 30.59 0.13 -4.28 16 3 C 0.06 2.09 4.61 86.31 0.40 2.49 16 4 N -0.55 -21.27 4.65 -905.36 -4.21 -25.48 16 5 C 0.21 9.99 4.41 85.56 0.38 10.36 16 6 C -0.52 -27.91 8.56 25.60 0.22 -27.69 16 7 H 0.06 3.00 7.10 -2.91 -0.02 2.98 16 8 C 0.01 0.52 5.46 84.66 0.46 0.98 16 9 N -0.93 -53.25 13.29 21.45 0.28 -52.96 16 10 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 14 C 0.11 3.41 5.13 85.56 0.44 3.85 16 15 C 0.10 3.00 6.07 43.49 0.26 3.26 16 16 N -0.29 -10.53 12.98 -47.16 -0.61 -11.14 16 17 O -0.02 -0.57 13.71 70.17 0.96 0.39 16 18 N -0.30 -9.01 12.98 -47.16 -0.61 -9.62 16 19 C 0.10 2.49 6.47 43.49 0.28 2.77 16 20 C -0.11 -1.49 9.63 71.24 0.69 -0.81 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.05 1.74 6.15 -2.39 -0.01 1.73 16 25 H 0.08 1.76 4.74 -2.38 -0.01 1.74 16 26 H 0.07 2.00 5.67 -2.39 -0.01 1.98 16 27 H 0.06 2.24 6.95 -2.38 -0.02 2.22 16 28 H 0.00 0.06 5.89 -2.39 -0.01 0.04 16 29 H 0.00 0.13 7.86 -2.39 -0.02 0.11 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.10 2.37 5.45 -2.38 -0.01 2.36 16 32 H 0.09 2.96 7.81 -2.39 -0.02 2.94 16 33 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.49 3.26 -2.38 -0.01 1.48 16 Total: -1.00 -65.44 282.96 2.92 -62.52 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.10 Total: 2.29 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 3.97 Total: -11.37 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -5.15 Total: -99.20 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: 0.96 Total: 0.39 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.44 2.92 -62.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248858954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.354 kcal (2) G-P(sol) polarization free energy of solvation -65.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds