Wall clock time and date at job start Sun Mar 29 2020 22:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47306 * 184.58795 * 3 2 1 5 5 N 1.46503 * 109.47022 * 184.58370 * 4 3 2 6 6 C 1.36938 * 119.99269 * 271.47178 * 5 4 3 7 7 H 1.08003 * 119.99864 * 140.63982 * 6 5 4 8 8 C 1.38808 * 120.00108 * 320.35173 * 6 5 4 9 9 N 1.31624 * 119.99528 * 159.10483 * 8 6 5 10 10 Si 1.86800 * 120.00297 * 339.10989 * 8 6 5 11 11 H 1.48498 * 109.47210 * 95.25750 * 10 8 6 12 12 H 1.48502 * 109.47002 * 215.25603 * 10 8 6 13 13 H 1.48502 * 109.47178 * 335.25520 * 10 8 6 14 14 C 1.46499 * 120.00320 * 91.47038 * 5 4 3 15 15 C 1.50697 * 109.47074 * 266.08564 * 14 5 4 16 16 N 1.29954 * 125.30218 * 274.58511 * 15 14 5 17 17 O 1.41880 * 107.41541 * 179.89460 * 16 15 14 18 18 N 1.41881 * 106.38475 * 0.36134 * 17 16 15 19 19 C 1.29945 * 107.41467 * 359.78680 * 18 17 16 20 20 C 1.50703 * 125.30517 * 180.02562 * 19 18 17 21 21 H 1.09007 * 109.47259 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47054 * 299.99698 * 1 2 3 23 23 H 1.08992 * 109.47401 * 59.99892 * 1 2 3 24 24 H 1.09006 * 109.47182 * 239.99591 * 2 1 3 25 25 H 1.09002 * 109.47411 * 120.00125 * 2 1 3 26 26 H 1.08994 * 109.46905 * 64.58247 * 3 2 1 27 27 H 1.08997 * 109.46619 * 304.58611 * 3 2 1 28 28 H 1.08994 * 109.47184 * 64.57907 * 4 3 2 29 29 H 1.09004 * 109.46571 * 304.57849 * 4 3 2 30 30 H 0.97002 * 119.99254 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.46858 * 26.08162 * 14 5 4 32 32 H 1.08994 * 109.47208 * 146.08339 * 14 5 4 33 33 H 1.09004 * 109.46598 * 275.16121 * 20 19 18 34 34 H 1.08998 * 109.47308 * 35.15758 * 20 19 18 35 35 H 1.08998 * 109.47291 * 155.16602 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1154 5 7 4.0623 2.8179 -0.0055 6 6 4.1768 3.5961 -1.1264 7 1 3.9152 4.6432 -1.0858 8 6 4.6348 3.0407 -2.3132 9 7 4.3699 3.6291 -3.4604 10 14 5.6268 1.4582 -2.2822 11 1 4.7225 0.3025 -2.5098 12 1 6.6568 1.4987 -3.3512 13 1 6.2898 1.3153 -0.9611 14 6 4.4364 3.3591 1.3035 15 6 3.2623 4.0934 1.8976 16 7 2.9557 5.3343 1.6629 17 8 1.7878 5.6320 2.4115 18 7 1.4483 4.4459 3.1122 19 6 2.3292 3.5435 2.7989 20 6 2.3494 2.1289 3.3181 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.7453 1.9320 0.9281 27 1 1.6111 1.9794 -0.8461 28 1 3.8575 1.0281 -1.0797 29 1 3.9911 0.8387 0.6851 30 1 4.6896 3.2407 -4.2898 31 1 4.7267 2.5426 1.9647 32 1 5.2737 4.0470 1.1864 33 1 2.8622 2.1021 4.2795 34 1 1.3267 1.7726 3.4417 35 1 2.8739 1.4889 2.6086 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248859538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:04 Heat of formation + Delta-G solvation = 97.640793 kcal Electronic energy + Delta-G solvation = -17865.818111 eV Core-core repulsion = 15096.716443 eV Total energy + Delta-G solvation = -2769.101668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94843 -36.96311 -34.29075 -33.80689 -32.53354 -31.43212 -28.75308 -28.50946 -26.72332 -23.86836 -22.36055 -21.12272 -20.69052 -19.97673 -17.02741 -16.21327 -15.93302 -15.35184 -14.75628 -14.47507 -14.11703 -13.91853 -13.46848 -13.31865 -13.04115 -12.79670 -12.47803 -12.11571 -12.07537 -11.58359 -11.36092 -11.27010 -11.09430 -10.92037 -10.61752 -10.47184 -10.34805 -10.26706 -10.15686 -9.80972 -9.60145 -8.64112 -7.10395 -6.09884 -3.60430 1.03279 2.47124 3.17119 3.21935 3.38046 3.41047 3.66820 4.34856 4.40378 4.77916 5.10705 5.20183 5.21748 5.29995 5.36387 5.40174 5.49569 5.62376 5.72851 5.77197 5.98441 6.04945 6.09019 6.09121 6.22008 6.22862 6.30644 6.35544 6.48567 6.77730 6.97140 7.47564 7.90893 8.25747 8.81812 9.55121 9.87457 11.04393 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.010508 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.469311 B = 2663.968689 C = 3474.657926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.141 4.141 4 C 0.132 3.868 5 N -0.587 5.587 6 C -0.282 4.282 7 H 0.083 0.917 8 C 0.045 3.955 9 N -0.891 5.891 10 Si 0.880 3.120 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.267 1.267 14 C 0.201 3.799 15 C 0.068 3.932 16 N -0.258 5.258 17 O 0.001 5.999 18 N -0.299 5.299 19 C 0.082 3.918 20 C -0.093 4.093 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 -8.355 11.394 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.180 4.180 4 C 0.007 3.993 5 N -0.308 5.308 6 C -0.410 4.410 7 H 0.100 0.900 8 C -0.157 4.157 9 N -0.531 5.531 10 Si 0.710 3.290 11 H -0.212 1.212 12 H -0.228 1.228 13 H -0.191 1.191 14 C 0.071 3.929 15 C -0.119 4.119 16 N -0.005 5.005 17 O -0.136 6.136 18 N -0.045 5.045 19 C -0.100 4.100 20 C -0.151 4.151 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.824 -7.043 11.224 13.548 hybrid contribution 0.647 -1.388 -0.304 1.561 sum -2.177 -8.430 10.920 13.966 Atomic orbital electron populations 1.21755 0.96437 1.00748 1.01735 1.21519 0.95428 0.97911 1.01372 1.22241 0.98483 0.95139 1.02176 1.21380 0.92144 0.85903 0.99872 1.44130 1.73161 1.11342 1.02182 1.18766 1.40740 0.95161 0.86316 0.89973 1.25458 0.97202 0.97738 0.95266 1.69870 1.44798 1.41064 0.97350 0.86885 0.80694 0.83823 0.77594 1.21194 1.22778 1.19149 1.19661 0.89299 0.96054 0.87858 1.26268 1.00617 0.91420 0.93602 1.80037 0.96960 1.14711 1.08803 1.93333 1.38391 1.28561 1.53282 1.79729 1.18230 0.93744 1.12817 1.24527 0.91738 0.98731 0.95023 1.20612 1.04688 0.87517 1.02234 0.93368 0.93151 0.92791 0.92282 0.92587 0.92811 0.91416 0.92362 0.93815 0.92456 0.90632 0.89620 0.89136 0.89652 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.90 16 3 C -0.14 -2.45 5.25 -26.73 -0.14 -2.59 16 4 C 0.13 2.51 4.27 -4.04 -0.02 2.49 16 5 N -0.59 -12.61 2.03 -174.61 -0.36 -12.96 16 6 C -0.28 -7.48 9.90 -15.06 -0.15 -7.63 16 7 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 8 C 0.05 1.25 5.32 -17.43 -0.09 1.15 16 9 N -0.89 -26.43 13.97 55.49 0.78 -25.66 16 10 Si 0.88 20.77 25.04 -169.99 -4.26 16.51 16 11 H -0.28 -6.49 6.69 56.52 0.38 -6.12 16 12 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 14 C 0.20 3.55 5.93 -5.20 -0.03 3.52 16 15 C 0.07 1.24 6.58 -82.38 -0.54 0.69 16 16 N -0.26 -5.43 12.98 33.74 0.44 -4.99 16 17 O 0.00 0.02 13.71 12.02 0.16 0.19 16 18 N -0.30 -5.38 12.98 33.74 0.44 -4.94 16 19 C 0.08 1.30 6.17 -82.38 -0.51 0.79 16 20 C -0.09 -0.99 9.05 36.01 0.33 -0.66 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.89 4.92 -51.93 -0.26 0.63 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.06 1.25 3.36 -51.93 -0.17 1.07 16 29 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.08 1.03 7.11 -51.93 -0.37 0.66 16 32 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.98 5.93 -51.93 -0.31 0.67 16 LS Contribution 288.42 15.07 4.35 4.35 Total: -1.00 -30.89 288.42 -4.28 -35.17 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.88 Total: -1.99 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.94 Total: -5.67 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 1.30 Total: -48.55 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: 0.16 Total: 0.19 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.26 Total: 16.51 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.89 -4.28 -35.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248859538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.809 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds