Wall clock time and date at job start Sun Mar 29 2020 22:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47306 * 184.58795 * 3 2 1 5 5 N 1.46503 * 109.47022 * 184.58370 * 4 3 2 6 6 C 1.36938 * 119.99269 * 271.47178 * 5 4 3 7 7 H 1.08003 * 119.99864 * 140.63982 * 6 5 4 8 8 C 1.38808 * 120.00108 * 320.35173 * 6 5 4 9 9 N 1.31624 * 119.99528 * 159.10483 * 8 6 5 10 10 Si 1.86800 * 120.00297 * 339.10989 * 8 6 5 11 11 H 1.48498 * 109.47210 * 95.25750 * 10 8 6 12 12 H 1.48502 * 109.47002 * 215.25603 * 10 8 6 13 13 H 1.48502 * 109.47178 * 335.25520 * 10 8 6 14 14 C 1.46499 * 120.00320 * 91.47038 * 5 4 3 15 15 C 1.50697 * 109.47074 * 266.08564 * 14 5 4 16 16 N 1.29954 * 125.30218 * 274.58511 * 15 14 5 17 17 O 1.41880 * 107.41541 * 179.89460 * 16 15 14 18 18 N 1.41881 * 106.38475 * 0.36134 * 17 16 15 19 19 C 1.29945 * 107.41467 * 359.78680 * 18 17 16 20 20 C 1.50703 * 125.30517 * 180.02562 * 19 18 17 21 21 H 1.09007 * 109.47259 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47054 * 299.99698 * 1 2 3 23 23 H 1.08992 * 109.47401 * 59.99892 * 1 2 3 24 24 H 1.09006 * 109.47182 * 239.99591 * 2 1 3 25 25 H 1.09002 * 109.47411 * 120.00125 * 2 1 3 26 26 H 1.08994 * 109.46905 * 64.58247 * 3 2 1 27 27 H 1.08997 * 109.46619 * 304.58611 * 3 2 1 28 28 H 1.08994 * 109.47184 * 64.57907 * 4 3 2 29 29 H 1.09004 * 109.46571 * 304.57849 * 4 3 2 30 30 H 0.97002 * 119.99254 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.46858 * 26.08162 * 14 5 4 32 32 H 1.08994 * 109.47208 * 146.08339 * 14 5 4 33 33 H 1.09004 * 109.46598 * 275.16121 * 20 19 18 34 34 H 1.08998 * 109.47308 * 35.15758 * 20 19 18 35 35 H 1.08998 * 109.47291 * 155.16602 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1154 5 7 4.0623 2.8179 -0.0055 6 6 4.1768 3.5961 -1.1264 7 1 3.9152 4.6432 -1.0858 8 6 4.6348 3.0407 -2.3132 9 7 4.3699 3.6291 -3.4604 10 14 5.6268 1.4582 -2.2822 11 1 4.7225 0.3025 -2.5098 12 1 6.6568 1.4987 -3.3512 13 1 6.2898 1.3153 -0.9611 14 6 4.4364 3.3591 1.3035 15 6 3.2623 4.0934 1.8976 16 7 2.9557 5.3343 1.6629 17 8 1.7878 5.6320 2.4115 18 7 1.4483 4.4459 3.1122 19 6 2.3292 3.5435 2.7989 20 6 2.3494 2.1289 3.3181 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.7453 1.9320 0.9281 27 1 1.6111 1.9794 -0.8461 28 1 3.8575 1.0281 -1.0797 29 1 3.9911 0.8387 0.6851 30 1 4.6896 3.2407 -4.2898 31 1 4.7267 2.5426 1.9647 32 1 5.2737 4.0470 1.1864 33 1 2.8622 2.1021 4.2795 34 1 1.3267 1.7726 3.4417 35 1 2.8739 1.4889 2.6086 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248859538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:04 Heat of formation + Delta-G solvation = 76.262382 kcal Electronic energy + Delta-G solvation = -17866.745149 eV Core-core repulsion = 15096.716443 eV Total energy + Delta-G solvation = -2770.028706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.35037 -38.52722 -35.58194 -35.20013 -34.18028 -33.19874 -30.04465 -29.64538 -28.38322 -25.45103 -23.82873 -22.55254 -21.96946 -21.39789 -18.83037 -17.75144 -17.47518 -16.90460 -16.15464 -15.96286 -15.53419 -15.25490 -14.75574 -14.57520 -14.44430 -14.18715 -13.73323 -13.62417 -13.27914 -12.93847 -12.86632 -12.68258 -12.62592 -12.25341 -11.98379 -11.94668 -11.77393 -11.68631 -11.55474 -11.49071 -11.20786 -10.61580 -8.92185 -8.20046 -5.68653 -0.36208 1.12672 1.36242 1.47585 1.59336 1.73661 2.30057 2.44156 2.98854 3.10845 3.34201 3.92347 4.08181 4.13949 4.20427 4.38379 4.46630 4.50089 4.56572 4.66912 4.77852 4.81710 4.89248 4.95268 5.01209 5.05421 5.15026 5.17453 5.36044 5.48007 5.59836 5.92217 6.07094 6.18159 6.93028 7.54816 7.90448 8.99285 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.010508 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.469311 B = 2663.968689 C = 3474.657926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.123 3.877 5 N -0.597 5.597 6 C -0.267 4.267 7 H 0.025 0.975 8 C -0.018 4.018 9 N -0.952 5.952 10 Si 0.955 3.045 11 H -0.270 1.270 12 H -0.315 1.315 13 H -0.234 1.234 14 C 0.197 3.803 15 C 0.072 3.928 16 N -0.305 5.305 17 O -0.038 6.038 18 N -0.313 5.313 19 C 0.103 3.897 20 C -0.095 4.095 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.014 0.986 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -12.478 14.391 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.173 4.173 4 C 0.000 4.000 5 N -0.318 5.318 6 C -0.397 4.397 7 H 0.042 0.958 8 C -0.215 4.215 9 N -0.595 5.595 10 Si 0.782 3.218 11 H -0.197 1.197 12 H -0.245 1.245 13 H -0.157 1.157 14 C 0.069 3.931 15 C -0.115 4.115 16 N -0.054 5.054 17 O -0.167 6.167 18 N -0.064 5.064 19 C -0.080 4.080 20 C -0.152 4.152 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.125 -11.138 14.268 18.225 hybrid contribution 0.351 -0.068 -1.173 1.226 sum -1.774 -11.207 13.095 17.327 Atomic orbital electron populations 1.21757 0.95824 1.02065 1.01059 1.21510 0.95992 0.95291 1.02896 1.22136 0.97509 0.97265 1.00355 1.21612 0.93095 0.84622 1.00720 1.44163 1.73864 1.11873 1.01941 1.18452 1.39273 0.93489 0.88505 0.95767 1.26220 0.98487 1.02303 0.94486 1.70046 1.47109 1.44094 0.98258 0.85688 0.78428 0.79223 0.78450 1.19710 1.24455 1.15719 1.20016 0.88511 0.97603 0.86955 1.26591 1.00816 0.90763 0.93307 1.80004 0.98085 1.17002 1.10268 1.93308 1.38544 1.30646 1.54240 1.79723 1.19491 0.93449 1.13721 1.25306 0.89434 1.00455 0.92844 1.20997 1.06583 0.83493 1.04152 0.91026 0.92418 0.95013 0.93053 0.88651 0.91807 0.96700 0.94651 0.88266 0.92779 0.84494 0.90695 0.85287 0.88074 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.12 -2.84 5.93 30.59 0.18 -2.65 16 3 C -0.13 -4.30 5.25 30.59 0.16 -4.14 16 4 C 0.12 4.20 4.27 86.38 0.37 4.57 16 5 N -0.60 -24.58 2.03 -706.35 -1.44 -26.02 16 6 C -0.27 -14.64 9.90 84.03 0.83 -13.81 16 7 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 8 C -0.02 -1.03 5.32 84.86 0.45 -0.58 16 9 N -0.95 -59.40 13.97 21.65 0.30 -59.10 16 10 Si 0.96 42.55 25.04 68.60 1.72 44.27 16 11 H -0.27 -11.33 6.69 99.48 0.67 -10.66 16 12 H -0.32 -14.74 7.11 99.48 0.71 -14.03 16 13 H -0.23 -9.12 7.11 99.48 0.71 -8.42 16 14 C 0.20 6.40 5.93 85.63 0.51 6.91 16 15 C 0.07 2.54 6.58 43.49 0.29 2.83 16 16 N -0.31 -13.26 12.98 -47.16 -0.61 -13.87 16 17 O -0.04 -1.60 13.71 70.15 0.96 -0.64 16 18 N -0.31 -10.96 12.98 -47.16 -0.61 -11.57 16 19 C 0.10 2.94 6.17 43.49 0.27 3.21 16 20 C -0.09 -1.44 9.05 71.24 0.64 -0.80 16 21 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.90 4.92 -2.39 -0.01 1.88 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.04 1.40 3.36 -2.39 -0.01 1.39 16 29 H 0.10 2.35 7.57 -2.39 -0.02 2.33 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 31 H 0.14 2.80 7.11 -2.39 -0.02 2.78 16 32 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 33 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.41 5.93 -2.39 -0.01 1.40 16 Total: -1.00 -75.10 288.42 5.78 -69.32 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.04 Total: 4.71 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.42 Total: -7.11 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -2.36 Total: -110.55 kcal Atomic # 8 Polarization: -1.60 SS G_CDS: 0.96 Total: -0.64 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.72 Total: 44.27 kcal Total: -75.10 5.78 -69.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248859538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.584 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds