Wall clock time and date at job start Sun Mar 29 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46507 * 125.86959 * 180.11860 * 14 13 12 16 16 C 1.53000 * 109.46723 * 125.32618 * 15 14 13 17 17 C 1.53005 * 109.46995 * 180.02562 * 16 15 14 18 18 O 1.42896 * 109.47226 * 179.97438 * 17 16 15 19 19 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 20 20 N 1.28632 * 110.18138 * 359.73745 * 19 14 13 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 27 27 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 28 28 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 29 29 H 1.08997 * 109.47042 * 245.32414 * 15 14 13 30 30 H 1.08998 * 109.47136 * 5.33076 * 15 14 13 31 31 H 1.09004 * 109.47522 * 299.99898 * 16 15 14 32 32 H 1.09001 * 109.47333 * 60.00022 * 16 15 14 33 33 H 1.09004 * 109.46880 * 300.00263 * 17 16 15 34 34 H 1.09001 * 109.47086 * 59.99842 * 17 16 15 35 35 H 0.96698 * 113.99979 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 6 2.5160 -7.1493 0.8909 14 7 3.5433 -7.9380 0.4988 15 6 3.9834 -9.1676 1.1627 16 6 4.0001 -10.3153 0.1510 17 6 4.4592 -11.5997 0.8444 18 8 4.4742 -12.6718 -0.1002 19 7 4.0714 -7.4188 -0.5539 20 7 3.4482 -6.3410 -0.8775 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 0.8535 -5.0450 0.8885 27 1 0.8542 -5.0446 -0.8914 28 1 1.8692 -7.3023 1.7422 29 1 4.9859 -9.0241 1.5659 30 1 3.2965 -9.4084 1.9739 31 1 2.9977 -10.4589 -0.2522 32 1 4.6871 -10.0746 -0.6603 33 1 5.4615 -11.4564 1.2480 34 1 3.7719 -11.8403 1.6555 35 1 4.7565 -13.5189 0.2708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254108886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:59 Heat of formation + Delta-G solvation = 22.362156 kcal Electronic energy + Delta-G solvation = -16010.683766 eV Core-core repulsion = 13238.317771 eV Total energy + Delta-G solvation = -2772.365995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09723 -37.78239 -35.76586 -34.51500 -32.54780 -31.72729 -30.41436 -27.14838 -26.48809 -23.74218 -22.70380 -21.71650 -20.79269 -19.78659 -18.03522 -17.10973 -16.56310 -16.13176 -15.88482 -14.86559 -14.46936 -14.20003 -14.04912 -13.92829 -13.27461 -12.95785 -12.32396 -11.88220 -11.83262 -11.77086 -11.53246 -11.30664 -10.82527 -10.72539 -10.52859 -10.44646 -10.39152 -9.95350 -9.55941 -9.31274 -9.05589 -8.72802 -8.26438 -5.92158 -3.93358 1.69492 2.27097 2.80846 3.38121 3.43714 3.47947 3.62242 4.13129 4.44262 4.51013 4.53563 4.64277 4.68735 4.81767 4.87802 5.10299 5.29833 5.41875 5.43736 5.60463 5.73503 6.04903 6.14466 6.26502 6.57832 6.64270 6.87168 7.02678 7.08833 7.26592 7.77865 7.93494 8.09333 8.53305 8.71289 9.13886 9.70135 11.19349 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.081079 B = 0.003206 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.259002 B = 8731.242593 C = 8860.535025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.038 4.038 12 C 0.002 3.998 13 C -0.062 4.062 14 N -0.299 5.299 15 C 0.123 3.877 16 C -0.137 4.137 17 C 0.081 3.919 18 O -0.572 6.572 19 N -0.092 5.092 20 N -0.259 5.259 21 H 0.259 0.741 22 H 0.017 0.983 23 H 0.015 0.985 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.188 0.812 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -24.266 6.209 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.077 4.077 12 C -0.135 4.135 13 C -0.211 4.211 14 N -0.093 5.093 15 C 0.001 3.999 16 C -0.175 4.175 17 C 0.003 3.997 18 O -0.377 6.377 19 N -0.071 5.071 20 N -0.127 5.127 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.205 0.795 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.995 -23.829 4.759 25.287 hybrid contribution -0.170 0.464 1.405 1.489 sum 6.825 -23.365 6.163 25.110 Atomic orbital electron populations 1.69961 1.06011 1.26456 1.51312 1.25018 0.94842 0.99183 0.95498 0.86613 0.79837 0.83556 0.78108 1.20665 1.21307 1.19940 1.21286 0.93098 0.91138 1.49972 0.92729 1.19120 0.94005 0.91355 0.97182 1.21578 0.98997 0.92588 1.00897 1.20143 0.94338 0.90566 1.02649 1.22432 0.98925 0.98625 0.93546 1.23412 0.97055 0.95449 1.05231 1.47217 1.22312 1.19431 1.20388 1.21824 1.02808 0.80294 0.94944 1.21764 1.04551 0.92008 0.99173 1.21982 0.99855 0.86944 0.90940 1.86489 1.91337 1.20724 1.39198 1.78253 1.20974 1.06398 1.01465 1.75101 1.06535 1.07808 1.23212 0.93111 0.96454 0.96640 0.92520 0.93670 0.90670 0.90444 0.79489 0.88313 0.87634 0.90222 0.89113 0.93012 0.93198 0.76953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.25 5.13 -26.73 -0.14 -2.39 16 11 C -0.04 -0.67 5.79 -27.89 -0.16 -0.83 16 12 C 0.00 0.04 6.50 -82.78 -0.54 -0.50 16 13 C -0.06 -0.80 11.49 -17.05 -0.20 -0.99 16 14 N -0.30 -3.71 3.44 -61.26 -0.21 -3.92 16 15 C 0.12 0.86 6.46 -4.04 -0.03 0.84 16 16 C -0.14 -1.03 5.71 -26.73 -0.15 -1.19 16 17 C 0.08 0.42 7.05 37.16 0.26 0.68 16 18 O -0.57 -3.96 13.66 -35.23 -0.48 -4.44 16 19 N -0.09 -1.51 12.91 60.35 0.78 -0.73 16 20 N -0.26 -4.92 12.40 33.29 0.41 -4.51 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.38 0.79 9.12 45.56 0.42 1.20 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -36.39 305.05 -5.30 -41.69 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -4.62 Total: -5.24 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.50 Total: -17.94 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 1.72 Total: -35.94 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.48 Total: -4.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.39 -5.30 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254108886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds