Wall clock time and date at job start Sun Mar 29 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46507 * 125.86959 * 180.11860 * 14 13 12 16 16 C 1.53000 * 109.46723 * 125.32618 * 15 14 13 17 17 C 1.53005 * 109.46995 * 180.02562 * 16 15 14 18 18 O 1.42896 * 109.47226 * 179.97438 * 17 16 15 19 19 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 20 20 N 1.28632 * 110.18138 * 359.73745 * 19 14 13 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 27 27 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 28 28 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 29 29 H 1.08997 * 109.47042 * 245.32414 * 15 14 13 30 30 H 1.08998 * 109.47136 * 5.33076 * 15 14 13 31 31 H 1.09004 * 109.47522 * 299.99898 * 16 15 14 32 32 H 1.09001 * 109.47333 * 60.00022 * 16 15 14 33 33 H 1.09004 * 109.46880 * 300.00263 * 17 16 15 34 34 H 1.09001 * 109.47086 * 59.99842 * 17 16 15 35 35 H 0.96698 * 113.99979 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 6 2.5160 -7.1493 0.8909 14 7 3.5433 -7.9380 0.4988 15 6 3.9834 -9.1676 1.1627 16 6 4.0001 -10.3153 0.1510 17 6 4.4592 -11.5997 0.8444 18 8 4.4742 -12.6718 -0.1002 19 7 4.0714 -7.4188 -0.5539 20 7 3.4482 -6.3410 -0.8775 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 0.8535 -5.0450 0.8885 27 1 0.8542 -5.0446 -0.8914 28 1 1.8692 -7.3023 1.7422 29 1 4.9859 -9.0241 1.5659 30 1 3.2965 -9.4084 1.9739 31 1 2.9977 -10.4589 -0.2522 32 1 4.6871 -10.0746 -0.6603 33 1 5.4615 -11.4564 1.2480 34 1 3.7719 -11.8403 1.6555 35 1 4.7565 -13.5189 0.2708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254108886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:59 Heat of formation + Delta-G solvation = -5.346732 kcal Electronic energy + Delta-G solvation = -16011.885313 eV Core-core repulsion = 13238.317771 eV Total energy + Delta-G solvation = -2773.567542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.20007 -38.27146 -36.91877 -35.95770 -34.43612 -32.57776 -31.99050 -28.83106 -27.24832 -25.59578 -23.48209 -22.77041 -22.26266 -21.19658 -18.73121 -18.37725 -17.80254 -17.34817 -16.62570 -16.47232 -16.03312 -15.46406 -15.11424 -14.61984 -14.43515 -14.10064 -13.93512 -13.49691 -13.24106 -12.87011 -12.69214 -12.46293 -12.37945 -12.31181 -12.19911 -11.79788 -11.44851 -11.31903 -11.13516 -10.94498 -10.90199 -10.52468 -10.01989 -8.18029 -6.28234 0.66600 1.39859 1.41735 1.47745 1.52641 1.56603 2.42695 3.14559 3.18106 3.42365 3.70061 3.93394 3.99774 4.13075 4.23260 4.27510 4.38024 4.44577 4.51305 4.55360 4.74269 4.78499 4.97105 5.08595 5.14999 5.21495 5.26161 5.34822 5.56443 5.72992 5.81827 5.90284 6.30254 6.87797 6.90633 7.40146 7.56182 8.93646 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.081079 B = 0.003206 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.259002 B = 8731.242593 C = 8860.535025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.086 4.086 11 C -0.026 4.026 12 C -0.034 4.034 13 C -0.031 4.031 14 N -0.287 5.287 15 C 0.114 3.886 16 C -0.134 4.134 17 C 0.083 3.917 18 O -0.602 6.602 19 N -0.120 5.120 20 N -0.310 5.310 21 H 0.264 0.736 22 H -0.007 1.007 23 H 0.004 0.996 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.238 0.762 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -25.442 8.402 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.065 4.065 12 C -0.172 4.172 13 C -0.182 4.182 14 N -0.081 5.081 15 C -0.005 4.005 16 C -0.172 4.172 17 C 0.005 3.995 18 O -0.412 6.412 19 N -0.099 5.099 20 N -0.176 5.176 21 H 0.073 0.927 22 H 0.011 0.989 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.254 0.746 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.471 -25.054 6.950 27.052 hybrid contribution -0.316 0.714 0.758 1.088 sum 7.156 -24.340 7.708 26.515 Atomic orbital electron populations 1.70075 1.07570 1.27750 1.51716 1.25934 0.95829 1.03143 0.94770 0.85488 0.78675 0.78675 0.78455 1.19962 1.20229 1.19065 1.21704 0.93308 0.92813 1.50517 0.93008 1.19019 0.94305 0.92551 0.95303 1.21302 0.97871 0.93525 0.99766 1.19907 0.94263 0.88775 1.03556 1.22367 0.99430 1.00121 0.95311 1.24013 0.96242 0.93296 1.04627 1.47672 1.21268 1.20126 1.19044 1.22370 1.05181 0.77714 0.95221 1.21704 1.02813 0.93843 0.98858 1.22042 1.01455 0.85291 0.90702 1.86431 1.91676 1.22262 1.40823 1.78156 1.21846 1.06408 1.03468 1.75028 1.08059 1.09408 1.25153 0.92697 0.98864 0.97791 0.94596 0.93721 0.88090 0.91280 0.74551 0.86434 0.83094 0.91871 0.92245 0.91335 0.90464 0.74710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.55 -32.64 9.11 25.60 0.23 -32.41 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.89 5.13 30.60 0.16 -3.73 16 11 C -0.03 -0.92 5.79 29.85 0.17 -0.74 16 12 C -0.03 -1.11 6.50 41.59 0.27 -0.84 16 13 C -0.03 -0.70 11.49 83.49 0.96 0.26 16 14 N -0.29 -6.48 3.44 -347.73 -1.20 -7.67 16 15 C 0.11 1.20 6.46 86.38 0.56 1.76 16 16 C -0.13 -1.80 5.71 30.60 0.17 -1.63 16 17 C 0.08 0.63 7.05 71.98 0.51 1.14 16 18 O -0.60 -7.39 13.66 -148.98 -2.03 -9.42 16 19 N -0.12 -3.94 12.91 37.02 0.48 -3.46 16 20 N -0.31 -11.97 12.40 -48.60 -0.60 -12.57 16 21 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.10 2.98 8.12 -2.39 -0.02 2.97 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.24 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.15 0.28 8.07 -2.39 -0.02 0.27 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.07 0.29 8.14 -2.38 -0.02 0.28 16 34 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.40 0.91 9.12 -74.06 -0.68 0.24 16 Total: -1.00 -82.15 305.05 2.99 -79.16 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: 0.40 Total: -2.37 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 3.64 Total: -34.14 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.04 Total: -81.07 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -2.03 Total: -9.42 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -82.15 2.99 -79.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254108886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.813 kcal (2) G-P(sol) polarization free energy of solvation -82.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds