Wall clock time and date at job start Sun Mar 29 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47181 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.47084 * 179.97438 * 17 16 15 19 19 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 20 20 N 1.28637 * 110.18046 * 0.02562 * 19 13 12 21 21 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 23 23 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 24 24 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 25 25 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 26 26 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 27 27 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 28 28 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 29 29 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 30 30 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 31 31 H 1.08997 * 109.47497 * 299.99913 * 16 15 14 32 32 H 1.09004 * 109.47532 * 60.00281 * 16 15 14 33 33 H 1.08992 * 109.47254 * 300.00146 * 17 16 15 34 34 H 1.09007 * 109.46928 * 60.00195 * 17 16 15 35 35 H 0.96706 * 113.99933 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 6 0.5280 -10.7081 -0.8429 17 6 0.7223 -11.8394 0.1687 18 8 0.5197 -13.0971 -0.4785 19 7 0.1435 -6.5270 0.5554 20 7 0.5589 -5.3533 0.8788 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5572 -0.8898 23 1 0.6240 -2.5568 0.8903 24 1 2.8713 -3.6040 0.8923 25 1 2.8727 -3.6047 -0.8878 26 1 2.2940 -6.0138 -1.7353 27 1 -0.4628 -8.2729 -1.5636 28 1 1.2681 -8.3408 -1.9733 29 1 1.7564 -9.3187 0.2525 30 1 0.0255 -9.2507 0.6621 31 1 -0.4840 -10.7512 -1.2456 32 1 1.2470 -10.8187 -1.6547 33 1 1.7341 -11.7965 0.5717 34 1 0.0030 -11.7287 0.9802 35 1 0.6277 -13.8613 0.1043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254119288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:57 Heat of formation + Delta-G solvation = 21.757536 kcal Electronic energy + Delta-G solvation = -16042.103740 eV Core-core repulsion = 13269.711527 eV Total energy + Delta-G solvation = -2772.392213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.82156 -37.75642 -35.97040 -34.10763 -32.81772 -31.84057 -29.38555 -28.43834 -25.19845 -24.44550 -22.06206 -21.61741 -21.36456 -19.74285 -17.75391 -16.97898 -16.49042 -16.24340 -15.85661 -14.67719 -14.48967 -14.37198 -14.33524 -13.38352 -12.97359 -12.65884 -12.55507 -12.35414 -11.99503 -11.54638 -11.47617 -11.18680 -10.96673 -10.87308 -10.60689 -10.42283 -10.41545 -9.96465 -9.60510 -9.45190 -9.03463 -8.48891 -8.26101 -5.91516 -3.94570 1.95300 2.53399 3.11123 3.36853 3.43002 3.46482 3.71904 4.27815 4.41757 4.51927 4.60072 4.77044 4.84515 4.89197 5.00995 5.17218 5.21379 5.40213 5.43841 5.45873 5.62659 5.69382 5.80644 5.99334 6.55164 6.58512 6.76130 6.90730 7.12999 7.16023 7.78085 7.94697 8.11441 8.48126 8.98871 9.13174 9.68660 11.19758 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.096897 B = 0.003229 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.896207 B = 8668.693913 C = 8750.050928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.034 4.034 11 C 0.010 3.990 12 C -0.070 4.070 13 N -0.301 5.301 14 C 0.121 3.879 15 C -0.131 4.131 16 C -0.117 4.117 17 C 0.075 3.925 18 O -0.577 6.577 19 N -0.098 5.098 20 N -0.258 5.258 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.185 0.815 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -23.271 -3.045 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.219 4.219 13 N -0.096 5.096 14 C -0.001 4.001 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.002 4.002 18 O -0.382 6.382 19 N -0.077 5.077 20 N -0.125 5.125 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.202 0.798 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.915 -23.114 -2.497 23.327 hybrid contribution 1.276 0.722 -0.496 1.548 sum 3.191 -22.391 -2.994 22.815 Atomic orbital electron populations 1.69988 1.06065 1.26494 1.50700 1.25028 0.94817 0.99206 0.95428 0.86599 0.79848 0.83580 0.77976 1.20762 1.21278 1.19858 1.21246 0.92998 0.91007 1.50717 0.92560 1.19036 0.93709 0.90158 0.97927 1.20200 0.97586 0.88113 1.01377 1.22645 0.98344 0.98545 0.93222 1.23381 1.01855 0.91155 1.05513 1.47254 1.27034 1.14764 1.20551 1.21953 1.04485 0.78448 0.95166 1.21768 1.03954 0.92362 0.98807 1.21410 1.03585 0.91915 0.98609 1.22151 0.99646 0.83637 0.94809 1.86455 1.94475 1.15914 1.41400 1.78205 1.19218 1.08712 1.01587 1.75110 1.10978 1.02978 1.23473 0.93046 0.96828 0.95481 0.91311 0.91553 0.79802 0.88541 0.87890 0.90820 0.89674 0.90578 0.90771 0.93483 0.93288 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 10 C -0.03 -0.72 5.73 -27.88 -0.16 -0.88 16 11 C 0.01 0.20 6.50 -82.77 -0.54 -0.34 16 12 C -0.07 -1.07 11.49 -17.05 -0.20 -1.27 16 13 N -0.30 -4.36 3.44 -61.26 -0.21 -4.57 16 14 C 0.12 1.07 6.46 -4.04 -0.03 1.05 16 15 C -0.13 -1.03 5.34 -26.73 -0.14 -1.17 16 16 C -0.12 -0.77 5.58 -26.73 -0.15 -0.92 16 17 C 0.08 0.49 7.05 37.16 0.26 0.75 16 18 O -0.58 -4.22 13.66 -35.23 -0.48 -4.70 16 19 N -0.10 -1.82 12.91 60.35 0.78 -1.04 16 20 N -0.26 -5.63 12.40 33.29 0.41 -5.21 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 25 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 26 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.38 1.09 9.12 45.56 0.42 1.51 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -36.12 305.05 -5.30 -41.42 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -4.62 Total: -4.50 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.50 Total: -15.91 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 1.72 Total: -37.88 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.48 Total: -4.70 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.12 -5.30 -41.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254119288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.176 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds