Wall clock time and date at job start Sun Mar 29 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47181 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.47084 * 179.97438 * 17 16 15 19 19 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 20 20 N 1.28637 * 110.18046 * 0.02562 * 19 13 12 21 21 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 23 23 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 24 24 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 25 25 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 26 26 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 27 27 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 28 28 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 29 29 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 30 30 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 31 31 H 1.08997 * 109.47497 * 299.99913 * 16 15 14 32 32 H 1.09004 * 109.47532 * 60.00281 * 16 15 14 33 33 H 1.08992 * 109.47254 * 300.00146 * 17 16 15 34 34 H 1.09007 * 109.46928 * 60.00195 * 17 16 15 35 35 H 0.96706 * 113.99933 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 6 0.5280 -10.7081 -0.8429 17 6 0.7223 -11.8394 0.1687 18 8 0.5197 -13.0971 -0.4785 19 7 0.1435 -6.5270 0.5554 20 7 0.5589 -5.3533 0.8788 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5572 -0.8898 23 1 0.6240 -2.5568 0.8903 24 1 2.8713 -3.6040 0.8923 25 1 2.8727 -3.6047 -0.8878 26 1 2.2940 -6.0138 -1.7353 27 1 -0.4628 -8.2729 -1.5636 28 1 1.2681 -8.3408 -1.9733 29 1 1.7564 -9.3187 0.2525 30 1 0.0255 -9.2507 0.6621 31 1 -0.4840 -10.7512 -1.2456 32 1 1.2470 -10.8187 -1.6547 33 1 1.7341 -11.7965 0.5717 34 1 0.0030 -11.7287 0.9802 35 1 0.6277 -13.8613 0.1043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254119288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:57 Heat of formation + Delta-G solvation = -5.775451 kcal Electronic energy + Delta-G solvation = -16043.297660 eV Core-core repulsion = 13269.711527 eV Total energy + Delta-G solvation = -2773.586133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.13684 -38.30760 -36.91598 -35.85874 -34.14290 -33.46319 -30.99634 -29.36253 -27.15513 -25.28884 -23.73162 -22.70206 -22.30782 -21.16889 -18.55201 -18.27734 -17.96254 -17.36258 -16.76610 -16.45750 -15.80530 -15.27425 -15.11585 -14.90384 -14.62408 -14.11383 -13.48762 -13.41493 -13.07848 -12.92099 -12.83919 -12.56969 -12.40846 -12.08681 -12.02086 -11.90673 -11.72862 -11.32184 -11.20304 -10.90101 -10.87896 -10.52544 -9.94290 -8.15709 -6.28297 0.71439 1.42656 1.45608 1.53641 1.56683 1.64011 2.44710 3.17321 3.21439 3.48803 3.73042 3.82999 4.00854 4.17054 4.21418 4.29671 4.34702 4.44584 4.52626 4.68126 4.72741 4.79936 4.86248 5.04218 5.06913 5.18107 5.26158 5.37564 5.53958 5.75223 5.80598 5.88990 6.25122 6.86256 6.90232 7.41183 7.62332 8.96834 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.096897 B = 0.003229 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.896207 B = 8668.693913 C = 8750.050928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.038 3.962 10 C -0.018 4.018 11 C -0.032 4.032 12 C -0.037 4.037 13 N -0.285 5.285 14 C 0.108 3.892 15 C -0.121 4.121 16 C -0.110 4.110 17 C 0.072 3.928 18 O -0.596 6.596 19 N -0.119 5.119 20 N -0.315 5.315 21 H 0.262 0.738 22 H -0.017 1.017 23 H -0.018 1.018 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.236 0.764 27 H 0.108 0.892 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -24.270 -4.680 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.000 4.000 10 C -0.057 4.057 11 C -0.171 4.171 12 C -0.188 4.188 13 N -0.080 5.080 14 C -0.011 4.011 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.006 4.006 18 O -0.404 6.404 19 N -0.098 5.098 20 N -0.181 5.181 21 H 0.071 0.929 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.252 0.748 27 H 0.126 0.874 28 H 0.162 0.838 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.929 -24.171 -4.120 24.832 hybrid contribution 0.605 0.877 -0.028 1.066 sum 4.534 -23.293 -4.147 24.090 Atomic orbital electron populations 1.70158 1.08197 1.27696 1.51883 1.26104 0.95733 1.03799 0.94769 0.85352 0.78597 0.77898 0.78596 1.19412 1.21238 1.18291 1.21736 0.93898 0.91870 1.50253 0.91053 1.18836 0.94092 0.92776 0.94281 1.19893 0.96316 0.86931 1.02592 1.22566 0.99669 0.99537 0.95324 1.23943 1.00802 0.89282 1.04727 1.47717 1.25223 1.15960 1.19116 1.22550 1.06635 0.75968 0.95955 1.21651 1.03317 0.92808 0.98158 1.21338 1.03823 0.90996 0.98694 1.22191 1.00144 0.83523 0.94753 1.86400 1.94582 1.16826 1.42642 1.78094 1.20228 1.08016 1.03471 1.75036 1.12701 1.04700 1.25649 0.92931 0.99855 0.99943 0.91588 0.88698 0.74790 0.87366 0.83790 0.90881 0.91561 0.90699 0.89719 0.92712 0.93298 0.75207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.09 13.29 21.45 0.28 -59.81 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.04 2.13 4.95 29.85 0.15 2.28 16 10 C -0.02 -0.78 5.73 29.85 0.17 -0.61 16 11 C -0.03 -1.28 6.50 41.60 0.27 -1.01 16 12 C -0.04 -1.03 11.49 83.49 0.96 -0.07 16 13 N -0.29 -7.69 3.44 -347.73 -1.20 -8.89 16 14 C 0.11 1.57 6.46 86.38 0.56 2.12 16 15 C -0.12 -1.65 5.34 30.59 0.16 -1.49 16 16 C -0.11 -1.19 5.58 30.59 0.17 -1.02 16 17 C 0.07 0.81 7.05 71.98 0.51 1.32 16 18 O -0.60 -7.67 13.66 -148.98 -2.03 -9.70 16 19 N -0.12 -4.44 12.91 37.02 0.48 -3.97 16 20 N -0.31 -14.13 12.40 -48.59 -0.60 -14.73 16 21 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 22 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 23 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 24 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 25 H 0.09 3.45 8.12 -2.39 -0.02 3.43 16 26 H 0.24 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.14 0.99 8.07 -2.38 -0.02 0.97 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.17 8.12 -2.38 -0.02 1.15 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.40 1.66 9.12 -74.05 -0.68 0.99 16 Total: -1.00 -82.12 305.05 2.99 -79.12 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 0.40 Total: 0.47 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.64 Total: -29.66 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -1.04 Total: -87.39 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -2.03 Total: -9.70 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -82.12 2.99 -79.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254119288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.349 kcal (2) G-P(sol) polarization free energy of solvation -82.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds