Wall clock time and date at job start Sun Mar 29 2020 22:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46470 * 2 1 4 4 O 1.42898 * 109.47358 * 119.99563 * 2 1 3 5 5 C 1.52999 * 109.47304 * 239.99921 * 2 1 3 6 6 N 1.46499 * 109.47071 * 174.99585 * 5 2 1 7 7 C 1.35316 * 125.86879 * 125.29461 * 6 5 2 8 8 C 1.35346 * 106.17696 * 180.18776 * 7 6 5 9 9 C 1.50696 * 126.75136 * 179.85675 * 8 7 6 10 10 C 1.52997 * 109.47242 * 124.70936 * 9 8 7 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 N 1.33775 * 106.49630 * 359.58825 * 8 7 6 21 21 N 1.28632 * 108.88391 * 0.26614 * 20 8 7 22 22 H 1.09003 * 109.46925 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47315 * 299.99940 * 1 2 3 24 24 H 1.08999 * 109.47295 * 60.00371 * 1 2 3 25 25 H 0.96698 * 114.00312 * 59.99817 * 4 2 1 26 26 H 1.08998 * 109.46913 * 54.99745 * 5 2 1 27 27 H 1.09002 * 109.46794 * 295.00073 * 5 2 1 28 28 H 1.08001 * 126.90819 * 0.03578 * 7 6 5 29 29 H 1.08996 * 109.47390 * 4.70906 * 9 8 7 30 30 H 1.09001 * 109.46948 * 244.70548 * 9 8 7 31 31 H 1.09001 * 109.47502 * 60.00161 * 10 9 8 32 32 H 1.09001 * 109.47289 * 299.99957 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5000 -0.6178 -1.3109 7 6 4.3646 -1.6535 -1.4152 8 6 5.6038 -1.1097 -1.4352 9 6 6.9121 -1.8506 -1.5372 10 6 7.7100 -1.3151 -2.7277 11 6 9.0381 -2.0678 -2.8317 12 6 9.8243 -1.5400 -4.0039 13 1 9.4172 -0.7472 -4.6141 14 6 11.0627 -2.0698 -4.2982 15 7 11.5581 -3.0354 -3.5555 16 14 12.0369 -1.4159 -5.7517 17 1 12.8992 -0.2926 -5.3047 18 1 12.8855 -2.5007 -6.3070 19 1 11.1005 -0.9347 -6.7991 20 7 5.4386 0.2153 -1.3525 21 7 4.1807 0.4742 -1.2801 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7210 -1.5951 1.2331 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7715 -1.2055 28 1 4.1159 -2.7031 -1.4690 29 1 6.7176 -2.9136 -1.6788 30 1 7.4846 -1.7048 -0.6211 31 1 7.9047 -0.2520 -2.5861 32 1 7.1376 -1.4608 -3.6438 33 1 9.6107 -1.9225 -1.9156 34 1 8.8430 -3.1307 -2.9735 35 1 12.4292 -3.4084 -3.7626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254125559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:59 Heat of formation + Delta-G solvation = 23.385855 kcal Electronic energy + Delta-G solvation = -16344.601579 eV Core-core repulsion = 13572.279976 eV Total energy + Delta-G solvation = -2772.321604 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.05456 -38.37621 -35.18521 -34.01023 -32.46162 -31.58023 -30.40072 -27.61962 -26.83359 -23.74828 -22.84149 -21.76825 -20.84186 -19.80678 -17.71570 -16.70468 -16.55796 -16.12318 -15.66676 -14.76439 -14.51525 -14.43146 -13.86734 -13.58804 -13.30430 -12.71050 -12.53114 -12.21827 -11.93665 -11.68963 -11.42297 -11.28442 -10.93468 -10.80669 -10.68641 -10.43661 -10.36303 -9.81707 -9.53990 -9.29292 -9.04060 -8.68864 -8.25688 -5.91418 -3.92596 1.74886 2.31836 2.85843 3.38586 3.44139 3.48390 3.78376 3.88197 4.28614 4.44291 4.53964 4.60476 4.71581 4.82197 5.08608 5.12628 5.33517 5.43274 5.44459 5.51028 5.73014 6.07410 6.17226 6.29339 6.60892 6.67456 6.89018 7.04310 7.10910 7.27988 7.78848 7.94709 8.10220 8.54225 8.75815 9.14686 9.70850 11.20114 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.071675 B = 0.003562 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.559974 B = 7857.927189 C = 8023.454105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 H 0.116 0.884 4 O -0.552 6.552 5 C 0.085 3.915 6 N -0.292 5.292 7 C -0.062 4.062 8 C 0.003 3.997 9 C -0.037 4.037 10 C -0.102 4.102 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.260 5.260 21 N -0.092 5.092 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.374 0.626 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.186 0.814 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.290 0.652 6.664 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.030 3.970 3 H 0.134 0.866 4 O -0.357 6.357 5 C -0.038 4.038 6 N -0.086 5.086 7 C -0.211 4.211 8 C -0.135 4.135 9 C -0.077 4.077 10 C -0.141 4.141 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.127 5.127 21 N -0.071 5.071 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.221 0.779 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.203 0.797 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.961 2.660 6.878 25.070 hybrid contribution 0.122 -1.505 -1.092 1.864 sum -23.839 1.155 5.786 24.558 Atomic orbital electron populations 1.22452 0.94626 1.03124 1.03892 1.22285 0.93626 0.97961 0.83085 0.86575 1.86740 1.77029 1.28947 1.43021 1.22856 0.75034 1.04027 1.01854 1.47076 1.08182 1.05455 1.47915 1.23343 0.89885 0.95624 1.12272 1.22387 0.96352 0.90807 1.03938 1.20131 0.88799 0.97376 1.01354 1.21577 0.97520 1.00568 0.94394 1.19120 0.90338 0.95206 0.96992 1.21290 1.02122 1.19225 1.12852 0.92730 1.25017 0.97704 0.95126 0.96687 1.69962 1.18209 1.26403 1.39179 0.86614 0.80061 0.78502 0.82944 1.20670 1.21313 1.19933 1.75079 1.06491 1.14801 1.16300 1.78195 0.99105 1.09900 1.19914 0.91824 0.90705 0.90861 0.77901 0.87641 0.87601 0.79729 0.90741 0.90473 0.92521 0.93711 0.96455 0.96647 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.71 9.53 37.16 0.35 -0.35 16 2 C 0.09 0.63 3.67 -26.73 -0.10 0.53 16 3 H 0.12 1.07 8.00 -51.92 -0.42 0.65 16 4 O -0.55 -4.84 13.29 -35.23 -0.47 -5.31 16 5 C 0.08 0.58 6.09 -4.04 -0.02 0.55 16 6 N -0.29 -3.67 3.39 -61.26 -0.21 -3.87 16 7 C -0.06 -0.81 11.49 -17.05 -0.20 -1.01 16 8 C 0.00 0.05 6.50 -82.78 -0.54 -0.49 16 9 C -0.04 -0.68 5.79 -27.89 -0.16 -0.84 16 10 C -0.10 -2.27 5.13 -26.73 -0.14 -2.41 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 13 H 0.05 1.58 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 16 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 N -0.26 -5.02 12.40 33.29 0.41 -4.60 16 21 N -0.09 -1.54 12.82 60.35 0.77 -0.76 16 22 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.37 1.64 9.05 45.56 0.41 2.05 16 26 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 28 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -36.48 304.42 -5.15 -41.63 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.61 Total: -4.51 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.35 Total: -17.62 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 1.72 Total: -36.11 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.47 Total: -5.31 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.48 -5.15 -41.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254125559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.016 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds