Wall clock time and date at job start Sun Mar 29 2020 22:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46470 * 2 1 4 4 O 1.42898 * 109.47358 * 119.99563 * 2 1 3 5 5 C 1.52999 * 109.47304 * 239.99921 * 2 1 3 6 6 N 1.46499 * 109.47071 * 174.99585 * 5 2 1 7 7 C 1.35316 * 125.86879 * 125.29461 * 6 5 2 8 8 C 1.35346 * 106.17696 * 180.18776 * 7 6 5 9 9 C 1.50696 * 126.75136 * 179.85675 * 8 7 6 10 10 C 1.52997 * 109.47242 * 124.70936 * 9 8 7 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 N 1.33775 * 106.49630 * 359.58825 * 8 7 6 21 21 N 1.28632 * 108.88391 * 0.26614 * 20 8 7 22 22 H 1.09003 * 109.46925 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47315 * 299.99940 * 1 2 3 24 24 H 1.08999 * 109.47295 * 60.00371 * 1 2 3 25 25 H 0.96698 * 114.00312 * 59.99817 * 4 2 1 26 26 H 1.08998 * 109.46913 * 54.99745 * 5 2 1 27 27 H 1.09002 * 109.46794 * 295.00073 * 5 2 1 28 28 H 1.08001 * 126.90819 * 0.03578 * 7 6 5 29 29 H 1.08996 * 109.47390 * 4.70906 * 9 8 7 30 30 H 1.09001 * 109.46948 * 244.70548 * 9 8 7 31 31 H 1.09001 * 109.47502 * 60.00161 * 10 9 8 32 32 H 1.09001 * 109.47289 * 299.99957 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5000 -0.6178 -1.3109 7 6 4.3646 -1.6535 -1.4152 8 6 5.6038 -1.1097 -1.4352 9 6 6.9121 -1.8506 -1.5372 10 6 7.7100 -1.3151 -2.7277 11 6 9.0381 -2.0678 -2.8317 12 6 9.8243 -1.5400 -4.0039 13 1 9.4172 -0.7472 -4.6141 14 6 11.0627 -2.0698 -4.2982 15 7 11.5581 -3.0354 -3.5555 16 14 12.0369 -1.4159 -5.7517 17 1 12.8992 -0.2926 -5.3047 18 1 12.8855 -2.5007 -6.3070 19 1 11.1005 -0.9347 -6.7991 20 7 5.4386 0.2153 -1.3525 21 7 4.1807 0.4742 -1.2801 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7210 -1.5951 1.2331 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7715 -1.2055 28 1 4.1159 -2.7031 -1.4690 29 1 6.7176 -2.9136 -1.6788 30 1 7.4846 -1.7048 -0.6211 31 1 7.9047 -0.2520 -2.5861 32 1 7.1376 -1.4608 -3.6438 33 1 9.6107 -1.9225 -1.9156 34 1 8.8430 -3.1307 -2.9735 35 1 12.4292 -3.4084 -3.7626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254125559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:59 Heat of formation + Delta-G solvation = -4.422582 kcal Electronic energy + Delta-G solvation = -16345.807444 eV Core-core repulsion = 13572.279976 eV Total energy + Delta-G solvation = -2773.527468 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.16746 -38.96998 -36.74262 -35.30570 -34.28932 -32.22878 -31.95917 -28.91301 -27.97648 -25.59830 -23.63884 -22.79812 -22.32446 -21.28176 -18.70872 -18.28157 -17.56170 -17.11012 -16.57807 -16.36467 -16.02256 -15.44880 -15.06850 -14.87602 -14.30621 -13.82240 -13.70318 -13.34502 -13.18805 -12.87605 -12.80034 -12.62899 -12.45532 -12.35997 -12.07370 -11.76056 -11.61932 -11.39599 -11.31248 -11.09476 -10.73584 -10.52589 -9.98550 -8.18066 -6.28399 0.70785 1.39824 1.41802 1.51578 1.52880 1.59360 2.42720 3.14497 3.29358 3.36522 3.54818 3.81739 3.98121 4.05972 4.22441 4.30153 4.36750 4.44935 4.56462 4.74384 4.78888 4.85033 5.05783 5.15188 5.21284 5.24296 5.26959 5.35502 5.56204 5.75558 5.81601 5.90009 6.30119 6.77211 6.87589 7.40019 7.59084 8.93679 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.071675 B = 0.003562 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.559974 B = 7857.927189 C = 8023.454105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H 0.083 0.917 4 O -0.581 6.581 5 C 0.073 3.927 6 N -0.278 5.278 7 C -0.033 4.033 8 C -0.034 4.034 9 C -0.025 4.025 10 C -0.086 4.086 11 C 0.026 3.974 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.266 1.266 20 N -0.312 5.312 21 N -0.119 5.119 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.392 0.608 26 H 0.124 0.876 27 H 0.151 0.849 28 H 0.235 0.765 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.044 0.956 33 H -0.007 1.007 34 H 0.004 0.996 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.382 -0.492 5.832 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.032 3.968 3 H 0.101 0.899 4 O -0.390 6.390 5 C -0.046 4.046 6 N -0.072 5.072 7 C -0.184 4.184 8 C -0.173 4.173 9 C -0.065 4.065 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.584 4.584 13 H 0.070 0.930 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.202 1.202 19 H -0.190 1.190 20 N -0.178 5.178 21 N -0.098 5.098 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.242 0.758 26 H 0.142 0.858 27 H 0.169 0.831 28 H 0.252 0.748 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.011 0.989 34 H 0.022 0.978 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.097 1.534 6.054 26.834 hybrid contribution 0.672 -1.190 -0.781 1.574 sum -25.425 0.344 5.273 25.968 Atomic orbital electron populations 1.22362 0.91890 1.04744 1.04027 1.22213 0.95525 0.96279 0.82742 0.89858 1.86698 1.77771 1.30643 1.43867 1.23452 0.71594 1.07163 1.02428 1.47542 1.10160 1.04326 1.45190 1.23936 0.88316 0.97484 1.08652 1.22328 0.97376 0.90626 1.06936 1.19893 0.89072 0.98741 0.98747 1.21303 0.95874 0.98738 0.96536 1.19015 0.92155 0.94921 0.95052 1.21705 1.03192 1.19593 1.13895 0.92990 1.25937 0.98753 0.95235 0.99733 1.70076 1.18802 1.27411 1.40849 0.85482 0.78467 0.78110 0.79197 1.19963 1.20214 1.19026 1.75005 1.08168 1.16482 1.18173 1.78090 0.98654 1.11663 1.21422 0.89419 0.91553 0.89773 0.75758 0.85767 0.83085 0.74844 0.88186 0.91428 0.94605 0.93733 0.98900 0.97801 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 9.53 71.98 0.69 -0.16 16 2 C 0.09 1.11 3.67 30.59 0.11 1.22 16 3 H 0.08 1.54 8.00 -2.38 -0.02 1.52 16 4 O -0.58 -9.14 13.29 -148.98 -1.98 -11.12 16 5 C 0.07 0.74 6.09 86.38 0.53 1.26 16 6 N -0.28 -6.35 3.39 -347.74 -1.18 -7.53 16 7 C -0.03 -0.76 11.49 83.49 0.96 0.20 16 8 C -0.03 -1.14 6.50 41.59 0.27 -0.87 16 9 C -0.03 -0.92 5.79 29.85 0.17 -0.74 16 10 C -0.09 -3.93 5.13 30.60 0.16 -3.77 16 11 C 0.03 1.41 4.97 29.85 0.15 1.56 16 12 C -0.55 -32.82 9.11 25.60 0.23 -32.58 16 13 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 16 Si 0.96 45.93 29.54 68.60 2.03 47.95 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 N -0.31 -12.29 12.40 -48.60 -0.60 -12.89 16 21 N -0.12 -3.98 12.82 37.02 0.47 -3.50 16 22 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.39 2.29 9.05 -74.06 -0.67 1.62 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.15 0.20 8.07 -2.39 -0.02 0.18 16 28 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.10 3.03 8.12 -2.39 -0.02 3.01 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -82.42 304.42 3.16 -79.27 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 0.40 Total: -1.25 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.73 Total: -33.36 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.02 Total: -81.49 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.98 Total: -11.12 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -82.42 3.16 -79.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254125559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.844 kcal (2) G-P(sol) polarization free energy of solvation -82.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds