Wall clock time and date at job start Sun Mar 29 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 O 1.42903 * 109.46842 * 240.00945 * 2 1 3 5 5 C 1.52999 * 109.47452 * 120.00911 * 2 1 3 6 6 N 1.46499 * 109.47071 * 184.99662 * 5 2 1 7 7 C 1.35316 * 125.86879 * 125.29461 * 6 5 2 8 8 C 1.35346 * 106.17696 * 180.18776 * 7 6 5 9 9 C 1.50696 * 126.75136 * 179.85675 * 8 7 6 10 10 C 1.52997 * 109.47242 * 124.70936 * 9 8 7 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 N 1.33775 * 106.49630 * 359.58825 * 8 7 6 21 21 N 1.28632 * 108.88391 * 0.26614 * 20 8 7 22 22 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46754 * 299.99441 * 1 2 3 24 24 H 1.09006 * 109.47485 * 59.98954 * 1 2 3 25 25 H 0.96700 * 114.00403 * 59.99691 * 4 2 1 26 26 H 1.08998 * 109.46913 * 64.99822 * 5 2 1 27 27 H 1.09002 * 109.46794 * 305.00150 * 5 2 1 28 28 H 1.08001 * 126.90819 * 0.03578 * 7 6 5 29 29 H 1.08996 * 109.47390 * 4.70906 * 9 8 7 30 30 H 1.09001 * 109.46948 * 244.70548 * 9 8 7 31 31 H 1.09001 * 109.47502 * 60.00161 * 10 9 8 32 32 H 1.09001 * 109.47289 * 299.99957 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6181 1.3107 7 6 4.2176 -0.1357 2.3516 8 6 5.5176 -0.2193 1.9845 9 6 6.7137 0.1976 2.8009 10 6 7.6779 -0.9830 2.9325 11 6 8.8921 -0.5599 3.7620 12 6 9.8421 -1.7226 3.8911 13 1 9.6035 -2.6688 3.4283 14 6 11.0152 -1.5787 4.6010 15 7 11.3055 -0.4266 5.1650 16 14 12.1924 -3.0201 4.7617 17 1 11.6379 -4.1948 4.0419 18 1 13.5063 -2.6541 4.1744 19 1 12.3687 -3.3576 6.1971 20 7 5.5322 -0.7502 0.7567 21 7 4.3212 -0.9750 0.3859 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 1.7209 -0.2699 -1.9981 26 1 1.7517 -1.7717 1.2053 27 1 1.6054 -0.2620 2.1369 28 1 3.8305 0.2424 3.2863 29 1 6.3858 0.5111 3.7919 30 1 7.2200 1.0267 2.3064 31 1 8.0060 -1.2966 1.9415 32 1 7.1717 -1.8122 3.4269 33 1 9.3984 0.2694 3.2679 34 1 8.5637 -0.2467 4.7529 35 1 12.1306 -0.3255 5.6648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254125560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:01 Heat of formation + Delta-G solvation = 26.488079 kcal Electronic energy + Delta-G solvation = -16331.657708 eV Core-core repulsion = 13559.470627 eV Total energy + Delta-G solvation = -2772.187081 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.98156 -38.12857 -35.16891 -34.05152 -32.46405 -31.49951 -30.36250 -27.60106 -26.78049 -23.69276 -22.71297 -21.58426 -20.72329 -19.73917 -17.87973 -17.30069 -16.31477 -16.10915 -14.94017 -14.76279 -14.42701 -14.29361 -13.85525 -13.60674 -13.08167 -12.90744 -12.57824 -12.22454 -11.92161 -11.57032 -11.47646 -11.19738 -10.81756 -10.65960 -10.47217 -10.41279 -10.33058 -9.83411 -9.52106 -9.27222 -9.01167 -8.65047 -8.25082 -5.90632 -3.91587 1.81077 2.39231 2.91489 3.38105 3.45190 3.51018 3.67057 4.05674 4.43378 4.46370 4.55010 4.58244 4.77154 4.95876 5.17232 5.20296 5.25693 5.38565 5.45366 5.53815 5.76004 6.09351 6.20679 6.32692 6.63947 6.74548 6.91098 7.06469 7.26656 7.29840 7.80307 7.95907 8.11232 8.55510 8.85644 9.15971 9.71904 11.20944 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.069222 B = 0.003553 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.400897 B = 7878.364291 C = 8036.634106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.091 3.909 3 H 0.061 0.939 4 O -0.545 6.545 5 C 0.124 3.876 6 N -0.299 5.299 7 C -0.073 4.073 8 C 0.002 3.998 9 C -0.037 4.037 10 C -0.103 4.103 11 C 0.020 3.980 12 C -0.515 4.515 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 N -0.269 5.269 21 N -0.063 5.063 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.379 0.621 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.186 0.814 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.429 3.741 -7.211 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.030 3.970 3 H 0.079 0.921 4 O -0.350 6.350 5 C 0.002 3.998 6 N -0.093 5.093 7 C -0.222 4.222 8 C -0.136 4.136 9 C -0.076 4.076 10 C -0.141 4.141 11 C -0.017 4.017 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 N -0.136 5.136 21 N -0.043 5.043 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.226 0.774 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.203 0.797 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.910 2.825 -8.067 25.391 hybrid contribution 0.042 0.105 0.936 0.943 sum -23.867 2.931 -7.131 25.081 Atomic orbital electron populations 1.22475 0.94932 1.03541 1.03318 1.21946 0.93231 0.95525 0.86250 0.92070 1.86729 1.76753 1.56324 1.15214 1.22110 0.74366 1.04259 0.99069 1.47217 1.08433 1.41777 1.11920 1.23394 0.92462 1.09863 0.96481 1.22404 0.94980 1.02417 0.93768 1.20122 0.90809 1.00095 0.96597 1.21575 0.96276 0.95107 1.01106 1.19126 0.91282 0.96717 0.94562 1.21334 1.03983 0.97936 1.32103 0.92661 1.25019 0.98054 0.95720 0.95781 1.69973 1.24808 1.23705 1.35301 0.86561 0.81026 0.82954 0.77628 1.19733 1.21047 1.21127 1.75144 1.11393 1.15075 1.12016 1.78476 0.93989 1.17899 1.13900 0.91144 0.91142 0.91358 0.77403 0.87884 0.86554 0.79698 0.90787 0.90565 0.92508 0.93693 0.96470 0.96656 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.72 9.53 37.16 0.35 -0.37 16 2 C 0.09 0.64 3.78 -26.73 -0.10 0.54 16 3 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 4 O -0.55 -5.14 12.35 -35.23 -0.44 -5.57 16 5 C 0.12 0.98 6.17 -4.04 -0.02 0.96 16 6 N -0.30 -3.97 3.44 -61.26 -0.21 -4.18 16 7 C -0.07 -0.99 11.49 -17.05 -0.20 -1.18 16 8 C 0.00 0.03 6.50 -82.78 -0.54 -0.51 16 9 C -0.04 -0.67 5.79 -27.89 -0.16 -0.84 16 10 C -0.10 -2.30 5.13 -26.73 -0.14 -2.44 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 16 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 N -0.27 -5.31 12.40 33.29 0.41 -4.90 16 21 N -0.06 -1.11 12.09 60.35 0.73 -0.38 16 22 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.38 1.98 9.08 45.56 0.41 2.39 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.12 0.48 8.07 -51.93 -0.42 0.06 16 28 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -36.82 303.16 -5.19 -42.01 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.62 Total: -4.52 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.35 Total: -17.50 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 1.67 Total: -36.41 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.44 Total: -5.57 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.82 -5.19 -42.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254125560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.498 kcal (2) G-P(sol) polarization free energy of solvation -36.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds