Wall clock time and date at job start Sun Mar 29 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 O 1.42903 * 109.46842 * 240.00945 * 2 1 3 5 5 C 1.52999 * 109.47452 * 120.00911 * 2 1 3 6 6 N 1.46499 * 109.47071 * 184.99662 * 5 2 1 7 7 C 1.35316 * 125.86879 * 125.29461 * 6 5 2 8 8 C 1.35346 * 106.17696 * 180.18776 * 7 6 5 9 9 C 1.50696 * 126.75136 * 179.85675 * 8 7 6 10 10 C 1.52997 * 109.47242 * 124.70936 * 9 8 7 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 N 1.33775 * 106.49630 * 359.58825 * 8 7 6 21 21 N 1.28632 * 108.88391 * 0.26614 * 20 8 7 22 22 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46754 * 299.99441 * 1 2 3 24 24 H 1.09006 * 109.47485 * 59.98954 * 1 2 3 25 25 H 0.96700 * 114.00403 * 59.99691 * 4 2 1 26 26 H 1.08998 * 109.46913 * 64.99822 * 5 2 1 27 27 H 1.09002 * 109.46794 * 305.00150 * 5 2 1 28 28 H 1.08001 * 126.90819 * 0.03578 * 7 6 5 29 29 H 1.08996 * 109.47390 * 4.70906 * 9 8 7 30 30 H 1.09001 * 109.46948 * 244.70548 * 9 8 7 31 31 H 1.09001 * 109.47502 * 60.00161 * 10 9 8 32 32 H 1.09001 * 109.47289 * 299.99957 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6181 1.3107 7 6 4.2176 -0.1357 2.3516 8 6 5.5176 -0.2193 1.9845 9 6 6.7137 0.1976 2.8009 10 6 7.6779 -0.9830 2.9325 11 6 8.8921 -0.5599 3.7620 12 6 9.8421 -1.7226 3.8911 13 1 9.6035 -2.6688 3.4283 14 6 11.0152 -1.5787 4.6010 15 7 11.3055 -0.4266 5.1650 16 14 12.1924 -3.0201 4.7617 17 1 11.6379 -4.1948 4.0419 18 1 13.5063 -2.6541 4.1744 19 1 12.3687 -3.3576 6.1971 20 7 5.5322 -0.7502 0.7567 21 7 4.3212 -0.9750 0.3859 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 1.7209 -0.2699 -1.9981 26 1 1.7517 -1.7717 1.2053 27 1 1.6054 -0.2620 2.1369 28 1 3.8305 0.2424 3.2863 29 1 6.3858 0.5111 3.7919 30 1 7.2200 1.0267 2.3064 31 1 8.0060 -1.2966 1.9415 32 1 7.1717 -1.8122 3.4269 33 1 9.3984 0.2694 3.2679 34 1 8.5637 -0.2467 4.7529 35 1 12.1306 -0.3255 5.6648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254125560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:01 Heat of formation + Delta-G solvation = -1.376873 kcal Electronic energy + Delta-G solvation = -16332.866023 eV Core-core repulsion = 13559.470627 eV Total energy + Delta-G solvation = -2773.395396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.13504 -38.74188 -36.73627 -35.36005 -34.32187 -32.18039 -31.96570 -28.91048 -27.95127 -25.57720 -23.56910 -22.69145 -22.21563 -21.16305 -18.58284 -18.48146 -18.05968 -17.29314 -16.51865 -16.03573 -15.56646 -15.43851 -15.07014 -14.67879 -14.31116 -13.84267 -13.59296 -13.45843 -13.26887 -12.93837 -12.74536 -12.61757 -12.44978 -12.31526 -12.12327 -11.80176 -11.43723 -11.31042 -11.10937 -11.02435 -10.85838 -10.52810 -9.96861 -8.18262 -6.28393 0.73310 1.39573 1.40478 1.53504 1.54405 1.62023 2.42723 3.14268 3.19993 3.40652 3.62797 3.94981 3.97645 4.07585 4.18740 4.26406 4.45132 4.49603 4.57621 4.75719 4.84565 4.89165 4.94614 5.16178 5.21394 5.25661 5.27043 5.36249 5.56556 5.77795 5.81898 5.90137 6.30385 6.84180 6.87619 7.40030 7.65231 8.93638 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.069222 B = 0.003553 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.400897 B = 7878.364291 C = 8036.634106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 H 0.056 0.944 4 O -0.578 6.578 5 C 0.108 3.892 6 N -0.286 5.286 7 C -0.042 4.042 8 C -0.035 4.035 9 C -0.025 4.025 10 C -0.087 4.087 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.273 1.273 20 N -0.319 5.319 21 N -0.094 5.094 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.392 0.608 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.237 0.763 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.042 0.958 33 H -0.006 1.006 34 H 0.004 0.996 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.427 3.617 -6.199 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.029 3.971 3 H 0.074 0.926 4 O -0.386 6.386 5 C -0.012 4.012 6 N -0.081 5.081 7 C -0.192 4.192 8 C -0.173 4.173 9 C -0.064 4.064 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.069 0.931 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.199 1.199 20 N -0.186 5.186 21 N -0.073 5.073 22 H 0.087 0.913 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.242 0.758 26 H 0.124 0.876 27 H 0.181 0.819 28 H 0.253 0.747 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.012 0.988 34 H 0.022 0.978 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.946 2.698 -7.092 27.033 hybrid contribution 0.563 0.181 0.625 0.860 sum -25.383 2.879 -6.468 26.352 Atomic orbital electron populations 1.22385 0.92209 1.03875 1.04677 1.22070 0.95173 0.94706 0.85120 0.92609 1.86686 1.77687 1.57452 1.16735 1.22787 0.71313 1.05374 1.01683 1.47664 1.10110 1.39477 1.10820 1.24007 0.90932 1.06866 0.97381 1.22359 0.96360 1.04807 0.93766 1.19891 0.90491 0.97734 0.98269 1.21306 0.95560 0.96891 0.98752 1.19017 0.92535 0.95245 0.94330 1.21729 1.05296 0.98600 1.32676 0.93100 1.25931 0.99820 0.98766 0.95130 1.70081 1.25605 1.25734 1.35685 0.85433 0.78457 0.79220 0.78139 1.19209 1.20217 1.19855 1.75069 1.13073 1.16793 1.13666 1.78384 0.93952 1.19541 1.15460 0.91263 0.89164 0.90654 0.75843 0.87558 0.81852 0.74692 0.88176 0.91272 0.94657 0.93879 0.98796 0.97778 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.53 71.98 0.69 -0.15 16 2 C 0.09 1.06 3.78 30.59 0.12 1.17 16 3 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 4 O -0.58 -10.52 12.35 -148.98 -1.84 -12.36 16 5 C 0.11 1.37 6.17 86.38 0.53 1.90 16 6 N -0.29 -7.00 3.44 -347.74 -1.20 -8.19 16 7 C -0.04 -0.99 11.49 83.49 0.96 -0.03 16 8 C -0.03 -1.18 6.50 41.59 0.27 -0.91 16 9 C -0.02 -0.90 5.79 29.85 0.17 -0.72 16 10 C -0.09 -4.00 5.13 30.60 0.16 -3.84 16 11 C 0.03 1.43 4.97 29.85 0.15 1.57 16 12 C -0.54 -32.95 9.11 25.60 0.23 -32.72 16 13 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 16 Si 0.96 46.17 29.54 68.60 2.03 48.20 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 20 N -0.32 -12.84 12.40 -48.60 -0.60 -13.44 16 21 N -0.09 -3.30 12.09 37.02 0.45 -2.85 16 22 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 23 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 25 H 0.39 3.97 9.08 -74.06 -0.67 3.30 16 26 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.16 0.49 8.07 -2.39 -0.02 0.47 16 28 H 0.24 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.10 3.04 8.12 -2.39 -0.02 3.03 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -82.45 303.16 3.26 -79.19 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 0.40 Total: 0.24 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.74 Total: -33.19 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.07 Total: -82.08 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -1.84 Total: -12.36 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -82.45 3.26 -79.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254125560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.815 kcal (2) G-P(sol) polarization free energy of solvation -82.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds