Wall clock time and date at job start Sun Mar 29 2020 22:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 O 1.42905 * 109.47166 * 65.00329 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 3 2 8 8 C 1.35317 * 125.86734 * 125.00036 * 7 6 3 9 9 C 1.35351 * 106.17555 * 179.97438 * 8 7 6 10 10 C 1.50703 * 126.74773 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46813 * 125.00569 * 10 9 8 12 12 C 1.50701 * 109.47051 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47131 * 90.00550 * 16 14 12 18 18 H 1.48504 * 109.47282 * 210.00107 * 16 14 12 19 19 H 1.48500 * 109.47439 * 330.00052 * 16 14 12 20 20 N 1.33764 * 106.49572 * 0.02562 * 9 8 7 21 21 N 1.28638 * 108.88917 * 359.73267 * 20 9 8 22 22 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 23 23 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 26 26 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 27 27 H 0.96702 * 113.99974 * 59.99593 * 5 3 2 28 28 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 29 29 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 30 30 H 1.08003 * 126.91145 * 0.02927 * 8 7 6 31 31 H 1.09001 * 109.46759 * 244.99781 * 10 9 8 32 32 H 1.08992 * 109.47155 * 5.00521 * 10 9 8 33 33 H 1.08999 * 109.47139 * 299.99599 * 11 10 9 34 34 H 1.09001 * 109.47661 * 59.99550 * 11 10 9 35 35 H 0.97001 * 119.99626 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4443 -0.1257 7 7 4.0432 2.8238 -0.2458 8 6 4.9679 3.4141 0.5463 9 6 5.1075 4.6789 0.0850 10 6 6.0233 5.7427 0.6334 11 6 6.9205 6.2708 -0.4878 12 6 7.8358 7.3351 0.0604 13 1 7.7826 7.6078 1.1041 14 6 8.7411 7.9606 -0.7703 15 7 8.8055 7.6287 -2.0413 16 14 9.8762 9.2792 -0.0906 17 1 11.1315 8.6506 0.3932 18 1 10.1936 10.2588 -1.1606 19 1 9.2058 9.9769 1.0360 20 7 4.2720 4.7990 -0.9527 21 7 3.6600 3.6810 -1.1262 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0141 1.6542 2.0140 28 1 4.0029 0.9836 0.7597 29 1 3.8570 0.8801 -1.0113 30 1 5.4902 2.9658 1.3787 31 1 5.4279 6.5611 1.0382 32 1 6.6417 5.3176 1.4239 33 1 7.5158 5.4524 -0.8926 34 1 6.3021 6.6959 -1.2784 35 1 9.4422 8.0690 -2.6258 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254126322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:50 Heat of formation + Delta-G solvation = 24.648775 kcal Electronic energy + Delta-G solvation = -16517.512290 eV Core-core repulsion = 13745.245451 eV Total energy + Delta-G solvation = -2772.266839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.78912 -38.51033 -34.71135 -33.59151 -33.10544 -31.84592 -29.55475 -28.72870 -25.18175 -24.74374 -22.16452 -21.63004 -21.47825 -19.81131 -17.30119 -16.60941 -16.48307 -16.24853 -15.70081 -14.72114 -14.47292 -14.31948 -14.02067 -13.25885 -12.95879 -12.78149 -12.53478 -12.32679 -12.05559 -11.50799 -11.42873 -11.30389 -10.95607 -10.86718 -10.68427 -10.54424 -10.38375 -9.90414 -9.51156 -9.42685 -9.01851 -8.44478 -8.24687 -5.90337 -3.93237 1.99328 2.53125 3.16267 3.37669 3.43829 3.47515 3.91812 3.99347 4.42757 4.45760 4.53134 4.62107 4.86268 4.95672 4.98979 5.25490 5.33335 5.44961 5.45483 5.51883 5.66192 5.72246 5.86222 6.00252 6.58419 6.61263 6.79409 6.91745 7.15515 7.23699 7.79513 7.96581 8.13023 8.49726 9.03099 9.14558 9.69895 11.20955 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.080412 B = 0.003787 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.121660 B = 7391.006115 C = 7501.434633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.094 3.906 4 H 0.117 0.883 5 O -0.549 6.549 6 C 0.086 3.914 7 N -0.294 5.294 8 C -0.069 4.069 9 C 0.011 3.989 10 C -0.033 4.033 11 C 0.029 3.971 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.257 5.257 21 N -0.096 5.096 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.372 0.628 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.013 0.987 34 H 0.027 0.973 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 -18.534 7.065 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.034 3.966 4 H 0.134 0.866 5 O -0.354 6.354 6 C -0.037 4.037 7 N -0.089 5.089 8 C -0.218 4.218 9 C -0.126 4.126 10 C -0.073 4.073 11 C -0.008 4.008 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 N -0.124 5.124 21 N -0.075 5.075 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.219 0.781 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.200 0.800 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.867 -17.855 5.274 23.214 hybrid contribution 1.774 -0.182 1.530 2.350 sum -12.093 -18.036 6.805 22.756 Atomic orbital electron populations 1.21686 0.94400 1.01683 1.02850 1.22178 0.97928 0.95811 1.03170 1.22362 0.90852 0.94114 0.89262 0.86567 1.86733 1.76455 1.57022 1.15155 1.22780 0.97175 0.78541 1.05184 1.47026 1.28207 1.11879 1.21746 1.23303 1.00032 0.95824 1.02661 1.22601 0.99456 0.95406 0.95171 1.20193 0.94440 0.92965 0.99664 1.19032 0.93357 0.95577 0.92841 1.21253 1.18652 1.20399 0.95642 0.92561 1.25026 0.97460 0.97144 0.94845 1.69993 1.36489 1.42543 1.04238 0.86599 0.81047 0.81725 0.78636 1.20784 1.21281 1.19845 1.75092 1.07884 1.13531 1.15934 1.78180 1.21435 0.94912 1.12993 0.91907 0.92386 0.92545 0.90470 0.91236 0.78100 0.87793 0.87833 0.80000 0.91306 0.91608 0.96860 0.95473 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.81 37.16 0.36 -0.56 16 2 C -0.15 -0.82 5.61 -26.73 -0.15 -0.97 16 3 C 0.09 0.79 3.05 -26.73 -0.08 0.71 16 4 H 0.12 1.26 8.00 -51.93 -0.42 0.84 16 5 O -0.55 -5.38 12.82 -35.23 -0.45 -5.83 16 6 C 0.09 0.73 6.09 -4.04 -0.02 0.71 16 7 N -0.29 -4.33 3.38 -61.26 -0.21 -4.54 16 8 C -0.07 -1.08 11.49 -17.04 -0.20 -1.28 16 9 C 0.01 0.23 6.50 -82.78 -0.54 -0.31 16 10 C -0.03 -0.73 5.73 -27.88 -0.16 -0.89 16 11 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 12 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.89 13.29 55.43 0.74 -27.15 16 16 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 N -0.26 -5.76 12.40 33.29 0.41 -5.34 16 21 N -0.10 -1.84 12.83 60.35 0.77 -1.06 16 22 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.37 2.06 9.05 45.56 0.41 2.48 16 28 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.18 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -36.52 303.70 -5.11 -41.63 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.60 Total: -3.54 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.33 Total: -15.80 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.72 Total: -38.10 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.45 Total: -5.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.52 -5.11 -41.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254126322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.275 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds