Wall clock time and date at job start Sun Mar 29 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 O 1.42905 * 109.47166 * 65.00329 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 3 2 8 8 C 1.35317 * 125.86734 * 125.00036 * 7 6 3 9 9 C 1.35351 * 106.17555 * 179.97438 * 8 7 6 10 10 C 1.50703 * 126.74773 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46813 * 125.00569 * 10 9 8 12 12 C 1.50701 * 109.47051 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47131 * 90.00550 * 16 14 12 18 18 H 1.48504 * 109.47282 * 210.00107 * 16 14 12 19 19 H 1.48500 * 109.47439 * 330.00052 * 16 14 12 20 20 N 1.33764 * 106.49572 * 0.02562 * 9 8 7 21 21 N 1.28638 * 108.88917 * 359.73267 * 20 9 8 22 22 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 23 23 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 26 26 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 27 27 H 0.96702 * 113.99974 * 59.99593 * 5 3 2 28 28 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 29 29 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 30 30 H 1.08003 * 126.91145 * 0.02927 * 8 7 6 31 31 H 1.09001 * 109.46759 * 244.99781 * 10 9 8 32 32 H 1.08992 * 109.47155 * 5.00521 * 10 9 8 33 33 H 1.08999 * 109.47139 * 299.99599 * 11 10 9 34 34 H 1.09001 * 109.47661 * 59.99550 * 11 10 9 35 35 H 0.97001 * 119.99626 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4443 -0.1257 7 7 4.0432 2.8238 -0.2458 8 6 4.9679 3.4141 0.5463 9 6 5.1075 4.6789 0.0850 10 6 6.0233 5.7427 0.6334 11 6 6.9205 6.2708 -0.4878 12 6 7.8358 7.3351 0.0604 13 1 7.7826 7.6078 1.1041 14 6 8.7411 7.9606 -0.7703 15 7 8.8055 7.6287 -2.0413 16 14 9.8762 9.2792 -0.0906 17 1 11.1315 8.6506 0.3932 18 1 10.1936 10.2588 -1.1606 19 1 9.2058 9.9769 1.0360 20 7 4.2720 4.7990 -0.9527 21 7 3.6600 3.6810 -1.1262 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0141 1.6542 2.0140 28 1 4.0029 0.9836 0.7597 29 1 3.8570 0.8801 -1.0113 30 1 5.4902 2.9658 1.3787 31 1 5.4279 6.5611 1.0382 32 1 6.6417 5.3176 1.4239 33 1 7.5158 5.4524 -0.8926 34 1 6.3021 6.6959 -1.2784 35 1 9.4422 8.0690 -2.6258 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254126322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:49 Heat of formation + Delta-G solvation = -3.617965 kcal Electronic energy + Delta-G solvation = -16518.738028 eV Core-core repulsion = 13745.245451 eV Total energy + Delta-G solvation = -2773.492577 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.11988 -39.20042 -36.30628 -35.11120 -33.85111 -33.60264 -31.04904 -29.85073 -27.15897 -25.56092 -23.76189 -22.74213 -22.47688 -21.29020 -18.60230 -18.17947 -17.56892 -17.23447 -16.54517 -16.44860 -15.77109 -15.51597 -15.04016 -14.71862 -14.41847 -14.03330 -13.62252 -13.20233 -13.15922 -12.86167 -12.84922 -12.62265 -12.41363 -12.11929 -11.92743 -11.86028 -11.83931 -11.39194 -11.31587 -11.16159 -10.66392 -10.52447 -9.91778 -8.15817 -6.28489 0.74072 1.42425 1.45547 1.54293 1.56724 1.66035 2.44663 3.17116 3.31224 3.35422 3.60187 3.82728 3.94940 4.07366 4.21541 4.30028 4.35566 4.48816 4.61339 4.76180 4.79488 4.86608 5.04274 5.07377 5.09399 5.24434 5.37730 5.39350 5.53558 5.75067 5.81128 5.88692 6.25083 6.79679 6.89842 7.40949 7.64095 8.96751 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.080412 B = 0.003787 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.121660 B = 7391.006115 C = 7501.434633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.098 3.902 4 H 0.081 0.919 5 O -0.575 6.575 6 C 0.073 3.927 7 N -0.277 5.277 8 C -0.036 4.036 9 C -0.033 4.033 10 C -0.018 4.018 11 C 0.039 3.961 12 C -0.541 4.541 13 H 0.071 0.929 14 C -0.006 4.006 15 N -0.939 5.939 16 Si 0.972 3.028 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.260 1.260 20 N -0.317 5.317 21 N -0.121 5.121 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.391 0.609 28 H 0.152 0.848 29 H 0.122 0.878 30 H 0.236 0.764 31 H 0.063 0.937 32 H 0.095 0.905 33 H -0.016 1.016 34 H -0.019 1.019 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 -20.468 9.599 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.038 3.962 4 H 0.099 0.901 5 O -0.383 6.383 6 C -0.047 4.047 7 N -0.072 5.072 8 C -0.187 4.187 9 C -0.172 4.172 10 C -0.057 4.057 11 C 0.001 3.999 12 C -0.579 4.579 13 H 0.089 0.911 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.183 1.183 20 N -0.183 5.183 21 N -0.100 5.100 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.241 0.759 28 H 0.170 0.830 29 H 0.140 0.860 30 H 0.252 0.748 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.002 0.998 34 H -0.001 1.001 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.188 -19.826 7.815 25.061 hybrid contribution 1.469 0.285 0.746 1.672 sum -11.719 -19.541 8.561 24.341 Atomic orbital electron populations 1.21707 0.95353 1.02200 1.01657 1.22111 0.96959 0.93743 1.05107 1.22250 0.90569 0.95424 0.87917 0.90064 1.86698 1.77056 1.58200 1.16365 1.23435 0.97418 0.75458 1.08386 1.47521 1.26687 1.13214 1.19742 1.23889 0.98479 0.93867 1.02419 1.22549 1.00761 0.97374 0.96531 1.19885 0.94041 0.93705 0.98076 1.18825 0.93139 0.94356 0.93566 1.21737 1.18876 1.20804 0.96447 0.91098 1.26103 0.99399 0.99830 0.95022 1.70163 1.37584 1.44163 1.05983 0.85347 0.78781 0.78206 0.78080 1.19329 1.21205 1.18349 1.75013 1.09658 1.15756 1.17867 1.78060 1.22131 0.95100 1.14706 0.92936 0.93846 0.91117 0.89189 0.88511 0.75912 0.82980 0.86004 0.74767 0.91856 0.88651 0.99760 1.00055 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.81 71.98 0.71 -0.94 16 2 C -0.14 -1.08 5.61 30.60 0.17 -0.91 16 3 C 0.10 1.45 3.05 30.60 0.09 1.54 16 4 H 0.08 1.78 8.00 -2.39 -0.02 1.76 16 5 O -0.58 -10.13 12.82 -148.98 -1.91 -12.04 16 6 C 0.07 0.98 6.09 86.38 0.53 1.51 16 7 N -0.28 -7.63 3.38 -347.72 -1.18 -8.80 16 8 C -0.04 -1.02 11.49 83.49 0.96 -0.06 16 9 C -0.03 -1.36 6.50 41.60 0.27 -1.09 16 10 C -0.02 -0.79 5.73 29.85 0.17 -0.62 16 11 C 0.04 2.21 4.95 29.85 0.15 2.36 16 12 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 13 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 14 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 15 N -0.94 -60.31 13.29 21.45 0.28 -60.02 16 16 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 N -0.32 -14.74 12.40 -48.60 -0.60 -15.34 16 21 N -0.12 -4.70 12.83 37.02 0.48 -4.23 16 22 H 0.05 0.67 7.82 -2.39 -0.02 0.66 16 23 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.39 3.04 9.05 -74.06 -0.67 2.37 16 28 H 0.15 0.66 8.07 -2.39 -0.02 0.64 16 29 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.24 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 3.53 8.12 -2.39 -0.02 3.52 16 33 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 35 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -85.08 303.70 3.24 -81.84 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 0.40 Total: 0.90 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.74 Total: -29.72 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.02 Total: -88.39 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.91 Total: -12.04 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -85.08 3.24 -81.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254126322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.225 kcal (2) G-P(sol) polarization free energy of solvation -85.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds