Wall clock time and date at job start Sun Mar 29 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47556 * 2 1 4 4 H 1.09010 * 109.46721 * 302.46485 * 3 2 1 5 5 C 1.50701 * 109.47601 * 182.46689 * 3 2 1 6 6 H 1.07998 * 119.99806 * 239.99939 * 5 3 2 7 7 C 1.37871 * 119.99942 * 59.99300 * 5 3 2 8 8 N 1.31516 * 120.00283 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47063 * 59.99886 * 9 7 5 11 11 H 1.48505 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47077 * 300.00110 * 9 7 5 13 13 N 1.46904 * 109.47332 * 62.46060 * 3 2 1 14 14 C 1.46900 * 110.99615 * 64.34903 * 13 3 2 15 15 C 1.46903 * 110.99930 * 188.29954 * 13 3 2 16 16 C 1.50700 * 109.46566 * 164.23212 * 15 13 3 17 17 N 1.29947 * 126.28852 * 89.98384 * 16 15 13 18 18 O 1.21295 * 110.25296 * 179.97438 * 17 16 15 19 19 C 1.33650 * 109.81058 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.54788 * 179.97438 * 19 18 17 21 21 N 1.31124 * 106.89695 * 0.22639 * 19 18 17 22 22 H 1.09000 * 109.47177 * 174.96907 * 1 2 3 23 23 H 1.09004 * 109.47061 * 294.96945 * 1 2 3 24 24 H 1.09000 * 109.46923 * 54.96808 * 1 2 3 25 25 H 1.08999 * 109.47290 * 239.99250 * 2 1 3 26 26 H 1.09006 * 109.46516 * 119.99689 * 2 1 3 27 27 H 0.97003 * 120.00397 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47065 * 183.95520 * 14 13 3 29 29 H 1.09007 * 109.47051 * 303.95189 * 14 13 3 30 30 H 1.09003 * 109.47159 * 63.95342 * 14 13 3 31 31 H 1.09000 * 109.47191 * 44.23559 * 15 13 3 32 32 H 1.08997 * 109.46903 * 284.23157 * 15 13 3 33 33 H 1.08998 * 109.47637 * 0.02562 * 20 19 18 34 34 H 1.08997 * 109.47099 * 120.02854 * 20 19 18 35 35 H 1.08998 * 109.46551 * 240.01967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6411 1.9688 -0.8672 5 6 3.5458 1.4428 -0.0612 6 1 4.1184 1.8990 0.7329 7 6 4.1925 0.8608 -1.1307 8 7 3.4953 0.3057 -2.0978 9 14 6.0590 0.8607 -1.2062 10 1 6.6021 0.1432 -0.0249 11 1 6.5041 0.1788 -2.4480 12 1 6.5545 2.2606 -1.2060 13 7 1.5996 2.1176 1.2281 14 6 2.2024 1.4968 2.4152 15 6 1.9001 3.5546 1.1755 16 6 1.1113 4.2719 2.2405 17 7 1.4956 4.4980 3.4611 18 8 0.6339 5.0981 4.0683 19 6 -0.4136 5.3190 3.2682 20 6 -1.6895 6.0315 3.6363 21 7 -0.1212 4.7927 2.1034 22 1 -0.3633 -1.0237 -0.0901 23 1 -0.3633 0.4338 0.9317 24 1 -0.3633 0.5899 -0.8415 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.9503 -0.1042 -2.8502 28 1 1.8058 1.9699 3.3135 29 1 1.9645 0.4332 2.4294 30 1 3.2842 1.6268 2.3835 31 1 1.6281 3.9471 0.1956 32 1 2.9654 3.7095 1.3460 33 1 -1.6394 6.3523 4.6768 34 1 -1.8179 6.9023 2.9934 35 1 -2.5341 5.3552 3.5049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:18 Heat of formation + Delta-G solvation = 69.770543 kcal Electronic energy + Delta-G solvation = -17501.831201 eV Core-core repulsion = 14731.520989 eV Total energy + Delta-G solvation = -2770.310213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.26726 -37.51083 -35.51564 -33.64964 -32.46245 -31.18106 -28.78795 -27.47408 -26.82592 -24.43250 -23.18673 -22.24125 -20.67788 -19.03692 -17.88943 -17.07996 -16.44567 -15.26885 -14.86863 -14.41166 -14.10626 -13.59257 -13.49454 -13.19300 -12.79688 -12.43962 -12.11296 -11.95478 -11.66495 -11.32815 -11.17263 -10.96012 -10.88968 -10.78271 -10.62693 -10.53733 -10.04619 -9.77725 -9.62157 -9.43230 -9.14729 -8.39650 -7.26336 -6.02368 -4.16055 1.42821 2.58368 3.05804 3.27016 3.32265 3.35106 3.95312 4.36802 4.42912 5.12021 5.17678 5.20278 5.21922 5.26395 5.62068 5.97127 6.06763 6.16169 6.31591 6.34979 6.43461 6.45595 6.56067 6.68348 6.77516 7.09300 7.17199 7.28820 7.55238 7.72772 7.88224 8.09149 8.19080 8.39406 8.52877 8.92168 9.51874 10.97455 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.006470 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.376877 B = 4326.552093 C = 4806.564096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.042 0.958 5 C -0.550 4.550 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.530 5.530 14 C 0.033 3.967 15 C 0.149 3.851 16 C 0.199 3.801 17 N -0.388 5.388 18 O 0.067 5.933 19 C 0.157 3.843 20 C -0.056 4.056 21 N -0.469 5.469 22 H 0.025 0.975 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 8.133 8.964 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.060 0.940 5 C -0.589 4.589 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.255 5.255 14 C -0.116 4.116 15 C 0.019 3.981 16 C -0.074 4.074 17 N -0.098 5.098 18 O 0.009 5.991 19 C -0.064 4.064 20 C -0.114 4.114 21 N -0.204 5.204 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.944 7.604 8.689 14.016 hybrid contribution 1.862 0.073 -0.053 1.864 sum -6.082 7.677 8.637 13.058 Atomic orbital electron populations 1.21695 0.98739 0.98377 1.00618 1.21603 0.92276 0.98790 1.02141 1.19354 0.92831 0.91154 0.85620 0.94001 1.21696 0.92509 1.38066 1.06582 0.92525 1.24886 0.98035 0.94848 0.95406 1.69862 1.35172 1.37304 1.09820 0.86721 0.86039 0.78245 0.77395 1.20306 1.21172 1.20334 1.62401 1.58306 0.99453 1.05345 1.22239 0.97835 0.99560 0.91971 1.20182 0.95015 0.89776 0.93153 1.26215 0.90178 0.98108 0.92911 1.74646 1.12261 1.14160 1.08716 1.85259 1.20919 1.53943 1.38953 1.28807 0.94162 0.97875 0.85548 1.20276 0.87646 0.99847 1.03631 1.71892 1.12808 1.13811 1.21867 0.95560 0.93685 0.94031 0.88787 0.94742 0.92733 0.94416 0.91685 0.94766 0.88455 0.91887 0.88986 0.88273 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.71 37.16 0.36 -2.49 16 2 C -0.11 -2.61 5.06 -26.74 -0.14 -2.74 16 3 C 0.22 5.32 1.73 -68.87 -0.12 5.20 16 4 H 0.04 1.13 7.90 -51.92 -0.41 0.72 16 5 C -0.55 -14.54 7.30 -34.44 -0.25 -14.79 16 6 H 0.06 1.51 5.89 -52.49 -0.31 1.20 16 7 C 0.07 1.92 5.30 -17.82 -0.09 1.82 16 8 N -0.88 -24.52 11.30 55.43 0.63 -23.90 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -11.65 4.11 -237.72 -0.98 -12.63 16 14 C 0.03 0.69 8.73 60.06 0.52 1.21 16 15 C 0.15 3.07 5.14 -4.97 -0.03 3.04 16 16 C 0.20 3.79 7.06 -156.37 -1.10 2.68 16 17 N -0.39 -7.09 11.56 30.90 0.36 -6.73 16 18 O 0.07 1.02 11.31 18.08 0.20 1.22 16 19 C 0.16 2.11 8.51 -13.06 -0.11 1.99 16 20 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 21 N -0.47 -8.13 11.55 -9.87 -0.11 -8.24 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.04 0.92 7.83 -51.93 -0.41 0.51 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 2.47 6.01 -51.93 -0.31 2.16 16 26 H 0.03 0.81 6.31 -51.93 -0.33 0.48 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 28 H 0.04 0.75 7.01 -51.93 -0.36 0.39 16 29 H 0.06 1.36 6.19 -51.93 -0.32 1.04 16 30 H 0.03 0.75 6.33 -51.93 -0.33 0.43 16 31 H 0.10 2.00 7.84 -51.93 -0.41 1.60 16 32 H 0.06 1.34 7.41 -51.93 -0.38 0.96 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 287.49 15.07 4.33 4.33 Total: -1.00 -29.72 287.49 -5.99 -35.70 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.82 Total: -1.66 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.58 Total: -4.08 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.11 Total: -51.50 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.72 -5.99 -35.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.475 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds