Wall clock time and date at job start Sun Mar 29 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47556 * 2 1 4 4 H 1.09010 * 109.46721 * 302.46485 * 3 2 1 5 5 C 1.50701 * 109.47601 * 182.46689 * 3 2 1 6 6 H 1.07998 * 119.99806 * 239.99939 * 5 3 2 7 7 C 1.37871 * 119.99942 * 59.99300 * 5 3 2 8 8 N 1.31516 * 120.00283 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47063 * 59.99886 * 9 7 5 11 11 H 1.48505 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47077 * 300.00110 * 9 7 5 13 13 N 1.46904 * 109.47332 * 62.46060 * 3 2 1 14 14 C 1.46900 * 110.99615 * 64.34903 * 13 3 2 15 15 C 1.46903 * 110.99930 * 188.29954 * 13 3 2 16 16 C 1.50700 * 109.46566 * 164.23212 * 15 13 3 17 17 N 1.29947 * 126.28852 * 89.98384 * 16 15 13 18 18 O 1.21295 * 110.25296 * 179.97438 * 17 16 15 19 19 C 1.33650 * 109.81058 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.54788 * 179.97438 * 19 18 17 21 21 N 1.31124 * 106.89695 * 0.22639 * 19 18 17 22 22 H 1.09000 * 109.47177 * 174.96907 * 1 2 3 23 23 H 1.09004 * 109.47061 * 294.96945 * 1 2 3 24 24 H 1.09000 * 109.46923 * 54.96808 * 1 2 3 25 25 H 1.08999 * 109.47290 * 239.99250 * 2 1 3 26 26 H 1.09006 * 109.46516 * 119.99689 * 2 1 3 27 27 H 0.97003 * 120.00397 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47065 * 183.95520 * 14 13 3 29 29 H 1.09007 * 109.47051 * 303.95189 * 14 13 3 30 30 H 1.09003 * 109.47159 * 63.95342 * 14 13 3 31 31 H 1.09000 * 109.47191 * 44.23559 * 15 13 3 32 32 H 1.08997 * 109.46903 * 284.23157 * 15 13 3 33 33 H 1.08998 * 109.47637 * 0.02562 * 20 19 18 34 34 H 1.08997 * 109.47099 * 120.02854 * 20 19 18 35 35 H 1.08998 * 109.46551 * 240.01967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6411 1.9688 -0.8672 5 6 3.5458 1.4428 -0.0612 6 1 4.1184 1.8990 0.7329 7 6 4.1925 0.8608 -1.1307 8 7 3.4953 0.3057 -2.0978 9 14 6.0590 0.8607 -1.2062 10 1 6.6021 0.1432 -0.0249 11 1 6.5041 0.1788 -2.4480 12 1 6.5545 2.2606 -1.2060 13 7 1.5996 2.1176 1.2281 14 6 2.2024 1.4968 2.4152 15 6 1.9001 3.5546 1.1755 16 6 1.1113 4.2719 2.2405 17 7 1.4956 4.4980 3.4611 18 8 0.6339 5.0981 4.0683 19 6 -0.4136 5.3190 3.2682 20 6 -1.6895 6.0315 3.6363 21 7 -0.1212 4.7927 2.1034 22 1 -0.3633 -1.0237 -0.0901 23 1 -0.3633 0.4338 0.9317 24 1 -0.3633 0.5899 -0.8415 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.9503 -0.1042 -2.8502 28 1 1.8058 1.9699 3.3135 29 1 1.9645 0.4332 2.4294 30 1 3.2842 1.6268 2.3835 31 1 1.6281 3.9471 0.1956 32 1 2.9654 3.7095 1.3460 33 1 -1.6394 6.3523 4.6768 34 1 -1.8179 6.9023 2.9934 35 1 -2.5341 5.3552 3.5049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:18 Heat of formation + Delta-G solvation = 48.709341 kcal Electronic energy + Delta-G solvation = -17502.744484 eV Core-core repulsion = 14731.520989 eV Total energy + Delta-G solvation = -2771.223495 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.56627 -39.30163 -36.87382 -35.12074 -34.13567 -32.97722 -29.71866 -29.10253 -28.74578 -26.22984 -24.73438 -23.79037 -22.05213 -20.95225 -19.19655 -18.50581 -18.34088 -17.14474 -16.27609 -16.08925 -15.71899 -15.20139 -14.65959 -14.28117 -14.13136 -14.06928 -13.63735 -13.49553 -13.13572 -12.98132 -12.83163 -12.70930 -12.63759 -12.39381 -12.36940 -12.01130 -11.94886 -11.63915 -11.41274 -11.09228 -10.81079 -10.46352 -9.12413 -8.07086 -6.28680 0.25625 1.23876 1.38171 1.39251 1.46357 2.04884 2.38935 2.70613 3.08530 3.14098 3.50950 4.02333 4.35755 4.42486 4.48622 4.61430 4.70200 4.70847 4.73344 4.74757 4.80997 4.89585 5.00082 5.11982 5.19806 5.22575 5.38859 5.42538 5.57854 5.74461 5.95431 6.09571 6.26695 6.45703 6.87487 7.28596 7.42090 8.89831 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.006470 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.376877 B = 4326.552093 C = 4806.564096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.223 3.777 4 H 0.012 0.988 5 C -0.559 4.559 6 H 0.050 0.950 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.044 3.956 15 C 0.155 3.845 16 C 0.181 3.819 17 N -0.405 5.405 18 O 0.075 5.925 19 C 0.180 3.820 20 C -0.055 4.055 21 N -0.503 5.503 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 8.915 10.380 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.030 0.970 5 C -0.598 4.598 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.546 5.546 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.105 4.105 15 C 0.025 3.975 16 C -0.092 4.092 17 N -0.115 5.115 18 O 0.016 5.984 19 C -0.040 4.040 20 C -0.113 4.113 21 N -0.237 5.237 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.972 8.393 10.106 15.908 hybrid contribution 2.080 -0.072 -0.423 2.123 sum -6.893 8.321 9.683 14.509 Atomic orbital electron populations 1.21549 0.96309 0.99736 1.00554 1.21454 0.94394 0.97722 1.00720 1.19137 0.91877 0.91594 0.85776 0.97018 1.21897 0.93604 1.37856 1.06456 0.93185 1.25551 1.01906 0.94661 0.95183 1.69977 1.36569 1.37819 1.10191 0.85805 0.81368 0.78167 0.77443 1.20024 1.20650 1.20150 1.62339 1.58106 1.00186 1.04601 1.22142 0.96818 0.99611 0.91915 1.19957 0.94721 0.89081 0.93707 1.25789 0.91110 0.99380 0.92904 1.74614 1.13527 1.14852 1.08467 1.85223 1.21129 1.53436 1.38609 1.30005 0.94625 0.95465 0.83899 1.20743 0.84474 1.00063 1.06021 1.71864 1.12366 1.15551 1.23967 0.93359 0.93249 0.94584 0.91354 0.94850 0.92716 0.93266 0.91566 0.96208 0.89359 0.93230 0.85757 0.86287 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.71 71.98 0.70 -4.37 16 2 C -0.10 -5.01 5.06 30.59 0.15 -4.86 16 3 C 0.22 11.22 1.73 44.17 0.08 11.30 16 4 H 0.01 0.67 7.90 -2.38 -0.02 0.65 16 5 C -0.56 -30.18 7.30 25.60 0.19 -29.99 16 6 H 0.05 2.72 5.89 -2.91 -0.02 2.70 16 7 C 0.03 1.51 5.30 84.65 0.45 1.96 16 8 N -0.91 -51.13 11.30 21.45 0.24 -50.89 16 9 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.53 -23.51 4.11 -906.02 -3.72 -27.23 16 14 C 0.04 1.84 8.73 127.69 1.12 2.96 16 15 C 0.16 6.57 5.14 85.56 0.44 7.01 16 16 C 0.18 6.86 7.06 138.46 0.98 7.84 16 17 N -0.41 -14.48 11.56 -60.32 -0.70 -15.18 16 18 O 0.08 2.15 11.31 74.78 0.85 3.00 16 19 C 0.18 4.37 8.51 88.38 0.75 5.13 16 20 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 21 N -0.50 -16.90 11.55 -303.19 -3.50 -20.40 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.05 1.96 7.83 -2.38 -0.02 1.94 16 24 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 3.66 6.01 -2.39 -0.01 3.64 16 26 H 0.03 1.57 6.31 -2.38 -0.02 1.55 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.05 1.94 7.01 -2.39 -0.02 1.93 16 29 H 0.07 2.74 6.19 -2.38 -0.01 2.72 16 30 H 0.02 0.88 6.33 -2.39 -0.02 0.86 16 31 H 0.09 3.81 7.84 -2.39 -0.02 3.79 16 32 H 0.05 2.19 7.41 -2.39 -0.02 2.17 16 33 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.65 287.49 1.88 -62.77 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.09 Total: 5.33 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.60 Total: -2.83 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -7.68 Total: -113.70 kcal Atomic # 8 Polarization: 2.15 SS G_CDS: 0.85 Total: 3.00 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.65 1.88 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.477 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds