Wall clock time and date at job start Sun Mar 29 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47074 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47009 * 179.97438 * 4 3 2 6 6 N 1.40583 * 127.38362 * 97.03091 * 5 4 3 7 7 N 1.28901 * 106.83885 * 179.97438 * 6 5 4 8 8 N 1.28422 * 110.35304 * 359.97438 * 7 6 5 9 9 C 1.31574 * 110.49461 * 359.74243 * 8 7 6 10 10 N 1.38224 * 126.45451 * 180.29519 * 9 8 7 11 11 C 1.36934 * 119.99227 * 174.04639 * 10 9 8 12 12 H 1.07995 * 120.00245 * 305.22767 * 11 10 9 13 13 C 1.38798 * 119.99904 * 125.23560 * 11 10 9 14 14 N 1.31572 * 120.00115 * 2.31537 * 13 11 10 15 15 Si 1.86795 * 120.00280 * 182.31676 * 13 11 10 16 16 H 1.48505 * 109.47132 * 89.99720 * 15 13 11 17 17 H 1.48496 * 109.47410 * 209.99756 * 15 13 11 18 18 H 1.48498 * 109.47247 * 330.00172 * 15 13 11 19 19 C 1.46501 * 120.00402 * 354.04862 * 10 9 8 20 20 C 1.52993 * 109.47160 * 84.66745 * 19 10 9 21 21 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47508 * 300.00054 * 1 2 3 23 23 H 1.09000 * 109.47009 * 59.99973 * 1 2 3 24 24 H 1.08996 * 109.47087 * 239.99929 * 2 1 3 25 25 H 1.08997 * 109.47158 * 119.99532 * 2 1 3 26 26 H 1.08997 * 109.46746 * 299.99784 * 3 2 1 27 27 H 1.09002 * 109.46997 * 59.99633 * 3 2 1 28 28 H 1.09000 * 109.47009 * 300.00027 * 4 3 2 29 29 H 1.08996 * 109.47087 * 59.99929 * 4 3 2 30 30 H 0.96994 * 120.00355 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.46570 * 204.66864 * 19 10 9 32 32 H 1.09003 * 109.46554 * 324.66709 * 19 10 9 33 33 H 1.09006 * 109.47244 * 300.00262 * 20 19 10 34 34 H 1.09001 * 109.47420 * 59.99946 * 20 19 10 35 35 H 1.09002 * 109.47416 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 7 4.4722 3.5833 1.1070 7 7 4.8226 4.7394 0.6575 8 7 4.6733 4.7871 -0.6171 9 6 4.2143 3.6403 -1.0704 10 7 3.9402 3.3289 -2.3889 11 6 3.5810 2.0523 -2.7302 12 1 4.2160 1.2219 -2.4593 13 6 2.4007 1.8257 -3.4246 14 7 1.6499 2.8407 -3.7947 15 14 1.8783 0.0796 -3.8337 16 1 1.0416 -0.4580 -2.7308 17 1 1.0942 0.0800 -5.0948 18 1 3.0837 -0.7716 -4.0006 19 6 4.0339 4.3643 -3.4210 20 6 5.4835 4.4814 -3.8958 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.9337 0.9286 0.8891 29 1 3.9329 0.9289 -0.8908 30 1 0.8249 2.6824 -4.2796 31 1 3.3961 4.0963 -4.2634 32 1 3.7084 5.3192 -3.0081 33 1 6.1213 4.7493 -3.0533 34 1 5.8090 3.5265 -4.3085 35 1 5.5534 5.2522 -4.6634 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262210958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:25 Heat of formation + Delta-G solvation = 109.190696 kcal Electronic energy + Delta-G solvation = -18212.484609 eV Core-core repulsion = 15476.176533 eV Total energy + Delta-G solvation = -2736.308076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44605 -36.92748 -35.58373 -32.94772 -32.40582 -30.51630 -29.13035 -28.52797 -25.21606 -23.82474 -22.45526 -21.44219 -20.73280 -20.03559 -17.83964 -15.99870 -15.59108 -15.25346 -15.15077 -14.75168 -13.95987 -13.50215 -13.11751 -12.86664 -12.60769 -12.32217 -11.97641 -11.83931 -11.44791 -11.40211 -11.28488 -11.05218 -10.93910 -10.71371 -10.59812 -10.45687 -10.10722 -9.96422 -9.69606 -9.50621 -9.10142 -8.98818 -7.05021 -6.55860 -4.52665 2.47542 2.94569 2.98044 3.04460 3.08493 3.76760 3.86086 4.59326 4.72917 5.24428 5.27064 5.44068 5.47035 5.90194 5.97063 5.98324 6.06433 6.11258 6.13719 6.21137 6.29020 6.34092 6.44010 6.56408 6.69380 6.77084 6.80394 6.91676 6.98739 7.11204 7.23799 7.43709 7.96338 8.37397 8.88501 9.28481 9.97815 10.38713 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.013214 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.021120 B = 2118.452526 C = 3266.261489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.141 3.859 5 N -0.423 5.423 6 N -0.153 5.153 7 N -0.043 5.043 8 N -0.418 5.418 9 C 0.488 3.512 10 N -0.408 5.408 11 C -0.338 4.338 12 H 0.083 0.917 13 C 0.062 3.938 14 N -0.852 5.852 15 Si 0.900 3.100 16 H -0.256 1.256 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.141 3.859 20 C -0.164 4.164 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.274 0.726 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -5.986 0.348 6.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.018 3.982 5 N -0.228 5.228 6 N -0.143 5.143 7 N -0.039 5.039 8 N -0.288 5.288 9 C 0.128 3.872 10 N -0.116 5.116 11 C -0.467 4.467 12 H 0.100 0.900 13 C -0.147 4.147 14 N -0.486 5.486 15 Si 0.724 3.276 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.191 1.191 19 C 0.017 3.983 20 C -0.222 4.222 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.061 -5.129 1.035 5.339 hybrid contribution -0.753 -1.665 -0.831 2.008 sum -1.814 -6.794 0.204 7.035 Atomic orbital electron populations 1.21722 0.96044 1.00949 1.01810 1.21468 0.95921 0.96644 1.01720 1.22004 0.94457 0.97114 1.03579 1.21849 0.94810 0.77719 1.03777 1.50649 1.54055 1.14178 1.03868 1.82121 1.24662 1.00020 1.07506 1.77488 1.10216 1.12279 1.03897 1.74641 1.32126 1.18965 1.03044 1.22443 0.92817 0.85916 0.86020 1.41366 1.63837 1.09666 0.96681 1.19155 1.04996 0.82780 1.39742 0.89969 1.25655 0.94735 0.98721 0.95634 1.69876 1.13215 1.30708 1.34779 0.86413 0.79740 0.82495 0.78909 1.18106 1.20621 1.19061 1.21370 0.95209 0.89766 0.91909 1.22175 0.98928 1.00683 1.00455 0.93212 0.93038 0.92591 0.91608 0.92421 0.89179 0.92626 0.90672 0.87289 0.91523 0.88015 0.92725 0.93136 0.93070 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -1.79 5.90 -26.73 -0.16 -1.95 16 3 C -0.13 -2.39 5.34 -26.73 -0.14 -2.54 16 4 C 0.14 2.65 5.66 -4.04 -0.02 2.62 16 5 N -0.42 -9.56 3.69 -61.85 -0.23 -9.79 16 6 N -0.15 -3.61 13.93 60.35 0.84 -2.77 16 7 N -0.04 -1.05 13.38 60.35 0.81 -0.24 16 8 N -0.42 -10.43 11.71 30.10 0.35 -10.08 16 9 C 0.49 11.81 8.34 -320.35 -2.67 9.14 16 10 N -0.41 -9.55 2.52 -116.59 -0.29 -9.84 16 11 C -0.34 -7.66 6.30 -15.07 -0.09 -7.75 16 12 H 0.08 1.83 6.02 -52.49 -0.32 1.51 16 13 C 0.06 1.39 4.41 -17.46 -0.08 1.31 16 14 N -0.85 -20.27 11.56 55.49 0.64 -19.63 16 15 Si 0.90 17.08 28.65 -169.99 -4.87 12.21 16 16 H -0.26 -4.58 6.03 56.52 0.34 -4.24 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 19 C 0.14 3.09 5.69 -4.05 -0.02 3.07 16 20 C -0.16 -3.11 10.21 37.15 0.38 -2.73 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.01 6.03 -51.93 -0.31 0.70 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.92 6.51 -51.93 -0.34 1.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.11 2.04 4.96 -51.93 -0.26 1.78 16 30 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 31 H 0.10 2.33 6.14 -51.93 -0.32 2.01 16 32 H 0.05 1.23 7.91 -51.93 -0.41 0.82 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 286.60 15.07 4.32 4.32 Total: -1.00 -26.04 286.60 -5.83 -31.87 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.96 Total: 4.51 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.44 Total: -0.55 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 2.12 Total: -52.36 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -4.87 Total: 12.21 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.04 -5.83 -31.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262210958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.059 kcal (2) G-P(sol) polarization free energy of solvation -26.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds