Wall clock time and date at job start Sun Mar 29 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47074 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47009 * 179.97438 * 4 3 2 6 6 N 1.40583 * 127.38362 * 97.03091 * 5 4 3 7 7 N 1.28901 * 106.83885 * 179.97438 * 6 5 4 8 8 N 1.28422 * 110.35304 * 359.97438 * 7 6 5 9 9 C 1.31574 * 110.49461 * 359.74243 * 8 7 6 10 10 N 1.38224 * 126.45451 * 180.29519 * 9 8 7 11 11 C 1.36934 * 119.99227 * 174.04639 * 10 9 8 12 12 H 1.07995 * 120.00245 * 305.22767 * 11 10 9 13 13 C 1.38798 * 119.99904 * 125.23560 * 11 10 9 14 14 N 1.31572 * 120.00115 * 2.31537 * 13 11 10 15 15 Si 1.86795 * 120.00280 * 182.31676 * 13 11 10 16 16 H 1.48505 * 109.47132 * 89.99720 * 15 13 11 17 17 H 1.48496 * 109.47410 * 209.99756 * 15 13 11 18 18 H 1.48498 * 109.47247 * 330.00172 * 15 13 11 19 19 C 1.46501 * 120.00402 * 354.04862 * 10 9 8 20 20 C 1.52993 * 109.47160 * 84.66745 * 19 10 9 21 21 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47508 * 300.00054 * 1 2 3 23 23 H 1.09000 * 109.47009 * 59.99973 * 1 2 3 24 24 H 1.08996 * 109.47087 * 239.99929 * 2 1 3 25 25 H 1.08997 * 109.47158 * 119.99532 * 2 1 3 26 26 H 1.08997 * 109.46746 * 299.99784 * 3 2 1 27 27 H 1.09002 * 109.46997 * 59.99633 * 3 2 1 28 28 H 1.09000 * 109.47009 * 300.00027 * 4 3 2 29 29 H 1.08996 * 109.47087 * 59.99929 * 4 3 2 30 30 H 0.96994 * 120.00355 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.46570 * 204.66864 * 19 10 9 32 32 H 1.09003 * 109.46554 * 324.66709 * 19 10 9 33 33 H 1.09006 * 109.47244 * 300.00262 * 20 19 10 34 34 H 1.09001 * 109.47420 * 59.99946 * 20 19 10 35 35 H 1.09002 * 109.47416 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 7 4.4722 3.5833 1.1070 7 7 4.8226 4.7394 0.6575 8 7 4.6733 4.7871 -0.6171 9 6 4.2143 3.6403 -1.0704 10 7 3.9402 3.3289 -2.3889 11 6 3.5810 2.0523 -2.7302 12 1 4.2160 1.2219 -2.4593 13 6 2.4007 1.8257 -3.4246 14 7 1.6499 2.8407 -3.7947 15 14 1.8783 0.0796 -3.8337 16 1 1.0416 -0.4580 -2.7308 17 1 1.0942 0.0800 -5.0948 18 1 3.0837 -0.7716 -4.0006 19 6 4.0339 4.3643 -3.4210 20 6 5.4835 4.4814 -3.8958 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.9337 0.9286 0.8891 29 1 3.9329 0.9289 -0.8908 30 1 0.8249 2.6824 -4.2796 31 1 3.3961 4.0963 -4.2634 32 1 3.7084 5.3192 -3.0081 33 1 6.1213 4.7493 -3.0533 34 1 5.8090 3.5265 -4.3085 35 1 5.5534 5.2522 -4.6634 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262210958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:25 Heat of formation + Delta-G solvation = 96.760019 kcal Electronic energy + Delta-G solvation = -18213.023643 eV Core-core repulsion = 15476.176533 eV Total energy + Delta-G solvation = -2736.847110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.28441 -38.67406 -37.07174 -34.50545 -34.14515 -32.29272 -30.82701 -30.07221 -26.91545 -25.37607 -24.20843 -23.08086 -22.11847 -21.79904 -19.59768 -17.73677 -17.31371 -17.02270 -16.63182 -16.37195 -15.58706 -14.80100 -14.69926 -14.46134 -14.28247 -13.83774 -13.56750 -13.45749 -13.04262 -12.91024 -12.74302 -12.65441 -12.46299 -12.19790 -11.99753 -11.88030 -11.78034 -11.46833 -11.44491 -11.28702 -10.85831 -10.68059 -8.84482 -8.30542 -6.32060 0.63357 1.28902 1.45301 1.49331 1.56353 1.91018 2.24329 2.86089 3.01878 3.74903 3.94718 4.12280 4.20372 4.29236 4.39093 4.50870 4.63601 4.67726 4.70665 4.77623 4.91135 4.93723 5.02658 5.09767 5.12204 5.21670 5.24196 5.33771 5.42413 5.49349 5.52976 5.72784 6.19902 6.59431 7.11524 7.49298 8.12204 8.65883 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.013214 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.021120 B = 2118.452526 C = 3266.261489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.134 3.866 5 N -0.421 5.421 6 N -0.152 5.152 7 N -0.056 5.056 8 N -0.435 5.435 9 C 0.471 3.529 10 N -0.412 5.412 11 C -0.346 4.346 12 H 0.088 0.912 13 C 0.035 3.965 14 N -0.883 5.883 15 Si 0.951 3.049 16 H -0.237 1.237 17 H -0.289 1.289 18 H -0.258 1.258 19 C 0.142 3.858 20 C -0.149 4.149 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.275 0.725 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 -8.009 0.517 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.161 4.161 4 C 0.013 3.987 5 N -0.226 5.226 6 N -0.142 5.142 7 N -0.052 5.052 8 N -0.306 5.306 9 C 0.110 3.890 10 N -0.120 5.120 11 C -0.474 4.474 12 H 0.106 0.894 13 C -0.172 4.172 14 N -0.517 5.517 15 Si 0.773 3.227 16 H -0.161 1.161 17 H -0.215 1.215 18 H -0.182 1.182 19 C 0.018 3.982 20 C -0.208 4.208 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.192 -7.161 1.215 7.360 hybrid contribution -0.731 -1.021 -0.885 1.536 sum -1.923 -8.182 0.330 8.411 Atomic orbital electron populations 1.21735 0.95395 1.02249 1.01202 1.21477 0.96463 0.94368 1.03024 1.21873 0.93800 0.98964 1.01413 1.22173 0.95281 0.76043 1.05184 1.50896 1.53572 1.15125 1.03030 1.82011 1.24265 0.99900 1.08060 1.77448 1.11012 1.12834 1.03911 1.74556 1.32840 1.19904 1.03311 1.22620 0.93450 0.86200 0.86689 1.41643 1.63602 1.10195 0.96596 1.19380 1.05506 0.82682 1.39841 0.89423 1.26276 0.94227 1.01790 0.94896 1.69979 1.13594 1.32681 1.35435 0.85632 0.79705 0.78587 0.78741 1.16125 1.21536 1.18201 1.21360 0.96882 0.88782 0.91131 1.22035 0.96383 1.01720 1.00656 0.90924 0.92411 0.94550 0.91724 0.89617 0.92786 0.93279 0.87870 0.87137 0.91540 0.89078 0.94193 0.94297 0.92915 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.11 5.90 30.60 0.18 -2.93 16 3 C -0.12 -4.21 5.34 30.60 0.16 -4.04 16 4 C 0.13 4.80 5.66 86.38 0.49 5.29 16 5 N -0.42 -18.75 3.69 -349.59 -1.29 -20.04 16 6 N -0.15 -7.10 13.93 37.02 0.52 -6.58 16 7 N -0.06 -2.76 13.38 37.02 0.50 -2.26 16 8 N -0.44 -21.94 11.71 -58.67 -0.69 -22.62 16 9 C 0.47 22.83 8.34 260.63 2.17 25.01 16 10 N -0.41 -19.34 2.52 -522.79 -1.32 -20.66 16 11 C -0.35 -15.45 6.30 84.03 0.53 -14.93 16 12 H 0.09 3.78 6.02 -2.91 -0.02 3.76 16 13 C 0.04 1.55 4.41 84.87 0.37 1.92 16 14 N -0.88 -42.16 11.56 21.65 0.25 -41.91 16 15 Si 0.95 33.68 28.65 68.60 1.97 35.64 16 16 H -0.24 -7.64 6.03 99.48 0.60 -7.04 16 17 H -0.29 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 C 0.14 6.25 5.69 86.38 0.49 6.74 16 20 C -0.15 -5.56 10.21 71.98 0.74 -4.82 16 21 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.77 6.03 -2.39 -0.01 1.75 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 2.28 6.51 -2.39 -0.02 2.27 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 28 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.11 3.94 4.96 -2.39 -0.01 3.92 16 30 H 0.27 12.53 8.31 -92.71 -0.77 11.76 16 31 H 0.09 4.22 6.14 -2.39 -0.01 4.20 16 32 H 0.04 1.84 7.91 -2.39 -0.02 1.82 16 33 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -55.20 286.60 6.76 -48.45 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.98 Total: 20.83 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.85 Total: 9.16 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -2.04 Total: -114.08 kcal Atomic # 14 Polarization: 33.68 SS G_CDS: 1.97 Total: 35.64 kcal Total: -55.20 6.76 -48.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262210958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.206 kcal (2) G-P(sol) polarization free energy of solvation -55.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds