Wall clock time and date at job start Sun Mar 29 2020 22:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00348 * 2 1 4 4 C 1.53000 * 109.47725 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47222 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46816 * 180.02562 * 5 4 3 7 7 C 1.35353 * 126.75076 * 124.99944 * 6 5 4 8 8 N 1.35309 * 106.17498 * 179.97438 * 7 6 5 9 9 C 1.46499 * 125.87027 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47215 * 124.97307 * 9 8 7 11 11 C 1.50701 * 109.47206 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00015 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00029 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99729 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99828 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47175 * 90.00136 * 15 13 11 17 17 H 1.48501 * 109.46954 * 209.99944 * 15 13 11 18 18 H 1.48501 * 109.47023 * 329.99868 * 15 13 11 19 19 N 1.28714 * 108.26535 * 359.97438 * 8 7 6 20 20 N 1.28637 * 110.18046 * 0.02562 * 19 8 7 21 21 H 1.09003 * 109.46918 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47382 * 300.00065 * 1 2 3 23 23 H 1.09004 * 109.46817 * 60.00131 * 1 2 3 24 24 H 1.08997 * 109.47261 * 59.99352 * 3 2 1 25 25 H 1.09003 * 109.47088 * 299.99878 * 3 2 1 26 26 H 1.09009 * 109.47001 * 59.99679 * 4 3 2 27 27 H 1.09003 * 109.46807 * 300.00135 * 4 3 2 28 28 H 1.08997 * 109.47274 * 60.00403 * 5 4 3 29 29 H 1.09004 * 109.46966 * 299.99566 * 5 4 3 30 30 H 1.08002 * 126.91189 * 359.97438 * 7 6 5 31 31 H 1.08997 * 109.47592 * 244.97299 * 9 8 7 32 32 H 1.09007 * 109.46901 * 4.97623 * 9 8 7 33 33 H 1.09001 * 109.47531 * 300.00255 * 10 9 8 34 34 H 1.09007 * 109.46928 * 60.00332 * 10 9 8 35 35 H 0.97000 * 119.99271 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6601 2.4633 0.0000 7 6 6.5165 3.0191 -0.8887 8 7 7.7578 2.6478 -0.4987 9 6 9.0115 3.0138 -1.1623 10 6 9.9487 3.6778 -0.1516 11 6 11.2382 4.0549 -0.8345 12 1 11.3753 3.8426 -1.8844 13 6 12.2428 4.6710 -0.1187 14 7 13.3678 5.0005 -0.7148 15 14 12.0058 5.0376 1.6976 16 1 12.4807 3.8830 2.5017 17 1 12.7831 6.2489 2.0636 18 1 10.5653 5.2725 1.9713 19 7 7.6480 1.9177 0.5557 20 7 6.4096 1.7884 0.8788 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 3.8575 0.6435 -0.8892 27 1 3.8567 0.6439 0.8909 28 1 3.8359 3.1238 0.8895 29 1 3.8365 3.1227 -0.8905 30 1 6.2606 3.6350 -1.7381 31 1 9.4856 2.1178 -1.5631 32 1 8.8027 3.7091 -1.9755 33 1 9.4748 4.5738 0.2493 34 1 10.1576 2.9825 0.6615 35 1 14.0744 5.4342 -0.2113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329244929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:10 Heat of formation + Delta-G solvation = 30.570590 kcal Electronic energy + Delta-G solvation = -16146.622306 eV Core-core repulsion = 13374.612256 eV Total energy + Delta-G solvation = -2772.010050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.87261 -38.20958 -35.59499 -34.27998 -32.74235 -30.71032 -30.29823 -27.42584 -25.84996 -25.46265 -22.46189 -21.86581 -21.30055 -19.86751 -17.44521 -16.63291 -16.40500 -16.06685 -15.94968 -15.27539 -14.68587 -14.33258 -14.17523 -13.87754 -13.30645 -12.87296 -12.56375 -12.34931 -11.94020 -11.84587 -11.44209 -11.23517 -11.12375 -11.02116 -10.66724 -10.56684 -10.23751 -10.00463 -9.90222 -9.52040 -9.44608 -8.84520 -8.70800 -6.22473 -4.24922 2.01117 2.80306 2.88931 3.24413 3.31690 3.36640 3.54672 4.31986 4.54655 4.75813 4.87223 4.98621 5.06104 5.09886 5.13040 5.15646 5.22012 5.32069 5.37037 5.43311 5.56619 5.65865 5.71903 6.01700 6.06501 6.15004 6.30274 6.43618 6.81174 6.93295 7.03928 7.07933 7.52608 8.25972 8.76657 8.91885 9.37634 10.89606 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.070585 B = 0.003586 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.590494 B = 7805.360014 C = 7984.700141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.113 4.113 5 C -0.022 4.022 6 C -0.035 4.035 7 C -0.054 4.054 8 N -0.274 5.274 9 C 0.121 3.879 10 C -0.020 4.020 11 C -0.531 4.531 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.894 5.894 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.078 5.078 20 N -0.281 5.281 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.185 0.815 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.023 0.977 34 H 0.032 0.968 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.469 -3.991 -1.212 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.061 4.061 6 C -0.174 4.174 7 C -0.206 4.206 8 N -0.067 5.067 9 C 0.002 3.998 10 C -0.058 4.058 11 C -0.570 4.570 12 H 0.096 0.904 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.706 3.294 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.058 5.058 20 N -0.146 5.146 21 H 0.103 0.897 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.202 0.798 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.352 -4.880 -0.133 21.903 hybrid contribution -0.563 1.245 -0.054 1.367 sum -21.915 -3.635 -0.187 22.215 Atomic orbital electron populations 1.22728 0.81233 1.02665 0.99870 1.87895 1.19525 1.28321 1.95402 1.22589 0.94365 0.84480 1.00090 1.21443 0.92057 0.97284 1.04295 1.19642 0.86643 0.96901 1.02940 1.21758 0.97215 1.02645 0.95828 1.23382 0.84583 1.07807 1.04809 1.47919 1.08819 1.31259 1.18719 1.22511 0.78981 1.01734 0.96579 1.19866 0.94782 0.96139 0.95059 1.20792 0.97304 1.40581 0.98278 0.90450 1.24921 0.94769 0.94574 0.98486 1.69883 1.05565 1.40858 1.36827 0.86779 0.78812 0.78336 0.85455 1.19812 1.21089 1.19093 1.78298 1.13925 1.11996 1.01574 1.75007 0.96344 1.19944 1.23349 0.89743 0.94128 0.94170 0.93205 0.93333 0.91142 0.90140 0.90314 0.90316 0.79816 0.88603 0.88137 0.95847 0.94922 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.27 10.70 -35.23 -0.38 -4.65 16 3 C 0.06 0.56 5.94 37.16 0.22 0.78 16 4 C -0.11 -1.22 5.56 -26.73 -0.15 -1.37 16 5 C -0.02 -0.23 5.79 -27.88 -0.16 -0.39 16 6 C -0.04 -0.53 6.50 -82.77 -0.54 -1.07 16 7 C -0.05 -0.78 11.49 -17.05 -0.20 -0.98 16 8 N -0.27 -4.93 3.44 -61.26 -0.21 -5.14 16 9 C 0.12 2.20 6.39 -4.04 -0.03 2.18 16 10 C -0.02 -0.46 4.17 -27.88 -0.12 -0.58 16 11 C -0.53 -14.24 9.66 -34.44 -0.33 -14.57 16 12 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 15 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 N -0.08 -1.59 12.91 60.35 0.78 -0.81 16 20 N -0.28 -5.27 12.40 33.29 0.41 -4.85 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.10 1.58 8.07 -51.93 -0.42 1.16 16 33 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 34 H 0.03 0.79 7.54 -51.93 -0.39 0.39 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -32.23 302.20 -4.44 -36.67 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -5.42 Total: -4.24 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.28 Total: -12.63 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 1.76 Total: -36.53 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.38 Total: -4.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.23 -4.44 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329244929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.242 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds