Wall clock time and date at job start Sun Mar 29 2020 22:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00348 * 2 1 4 4 C 1.53000 * 109.47725 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47222 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46816 * 180.02562 * 5 4 3 7 7 C 1.35353 * 126.75076 * 124.99944 * 6 5 4 8 8 N 1.35309 * 106.17498 * 179.97438 * 7 6 5 9 9 C 1.46499 * 125.87027 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47215 * 124.97307 * 9 8 7 11 11 C 1.50701 * 109.47206 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00015 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00029 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99729 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99828 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47175 * 90.00136 * 15 13 11 17 17 H 1.48501 * 109.46954 * 209.99944 * 15 13 11 18 18 H 1.48501 * 109.47023 * 329.99868 * 15 13 11 19 19 N 1.28714 * 108.26535 * 359.97438 * 8 7 6 20 20 N 1.28637 * 110.18046 * 0.02562 * 19 8 7 21 21 H 1.09003 * 109.46918 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47382 * 300.00065 * 1 2 3 23 23 H 1.09004 * 109.46817 * 60.00131 * 1 2 3 24 24 H 1.08997 * 109.47261 * 59.99352 * 3 2 1 25 25 H 1.09003 * 109.47088 * 299.99878 * 3 2 1 26 26 H 1.09009 * 109.47001 * 59.99679 * 4 3 2 27 27 H 1.09003 * 109.46807 * 300.00135 * 4 3 2 28 28 H 1.08997 * 109.47274 * 60.00403 * 5 4 3 29 29 H 1.09004 * 109.46966 * 299.99566 * 5 4 3 30 30 H 1.08002 * 126.91189 * 359.97438 * 7 6 5 31 31 H 1.08997 * 109.47592 * 244.97299 * 9 8 7 32 32 H 1.09007 * 109.46901 * 4.97623 * 9 8 7 33 33 H 1.09001 * 109.47531 * 300.00255 * 10 9 8 34 34 H 1.09007 * 109.46928 * 60.00332 * 10 9 8 35 35 H 0.97000 * 119.99271 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6601 2.4633 0.0000 7 6 6.5165 3.0191 -0.8887 8 7 7.7578 2.6478 -0.4987 9 6 9.0115 3.0138 -1.1623 10 6 9.9487 3.6778 -0.1516 11 6 11.2382 4.0549 -0.8345 12 1 11.3753 3.8426 -1.8844 13 6 12.2428 4.6710 -0.1187 14 7 13.3678 5.0005 -0.7148 15 14 12.0058 5.0376 1.6976 16 1 12.4807 3.8830 2.5017 17 1 12.7831 6.2489 2.0636 18 1 10.5653 5.2725 1.9713 19 7 7.6480 1.9177 0.5557 20 7 6.4096 1.7884 0.8788 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 3.8575 0.6435 -0.8892 27 1 3.8567 0.6439 0.8909 28 1 3.8359 3.1238 0.8895 29 1 3.8365 3.1227 -0.8905 30 1 6.2606 3.6350 -1.7381 31 1 9.4856 2.1178 -1.5631 32 1 8.8027 3.7091 -1.9755 33 1 9.4748 4.5738 0.2493 34 1 10.1576 2.9825 0.6615 35 1 14.0744 5.4342 -0.2113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329244929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:09 Heat of formation + Delta-G solvation = 8.290300 kcal Electronic energy + Delta-G solvation = -16147.588452 eV Core-core repulsion = 13374.612256 eV Total energy + Delta-G solvation = -2772.976196 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.15552 -38.90982 -36.96272 -35.49881 -34.54798 -32.15493 -31.65335 -28.18901 -27.51213 -26.25916 -23.96291 -22.95141 -22.59829 -21.17304 -19.28375 -17.75428 -17.39096 -17.15435 -17.04402 -16.31371 -16.06298 -15.70443 -15.31621 -15.08892 -14.78645 -14.41999 -13.80242 -13.36824 -13.16976 -13.03593 -12.77179 -12.44785 -12.36657 -12.16896 -11.99030 -11.92138 -11.88225 -11.60015 -11.47038 -10.89099 -10.84811 -10.55337 -10.04472 -8.38108 -6.43381 0.76095 1.30122 1.33311 1.42411 1.57707 1.59558 2.27766 2.88669 2.97599 3.49228 3.78755 4.00081 4.08832 4.16754 4.22292 4.33813 4.47236 4.51182 4.56199 4.56917 4.64682 4.67460 4.80309 4.89153 4.91700 5.05694 5.21364 5.27060 5.33520 5.40067 5.45519 5.77515 6.12334 6.31447 6.63667 7.22246 7.61919 8.77030 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.070585 B = 0.003586 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.590494 B = 7805.360014 C = 7984.700141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.063 3.937 4 C -0.108 4.108 5 C -0.017 4.017 6 C -0.039 4.039 7 C -0.040 4.040 8 N -0.284 5.284 9 C 0.131 3.869 10 C -0.014 4.014 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.020 3.980 14 N -0.937 5.937 15 Si 0.938 3.062 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.260 1.260 19 N -0.132 5.132 20 N -0.307 5.307 21 H 0.091 0.909 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.005 -3.055 -1.627 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.013 4.013 4 C -0.146 4.146 5 C -0.056 4.056 6 C -0.179 4.179 7 C -0.191 4.191 8 N -0.077 5.077 9 C 0.012 3.988 10 C -0.052 4.052 11 C -0.568 4.568 12 H 0.075 0.925 13 C -0.179 4.179 14 N -0.576 5.576 15 Si 0.763 3.237 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.185 1.185 19 N -0.111 5.111 20 N -0.172 5.172 21 H 0.109 0.891 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.249 0.751 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.904 -3.959 -0.534 24.236 hybrid contribution 0.129 0.916 0.001 0.925 sum -23.775 -3.043 -0.533 23.975 Atomic orbital electron populations 1.22909 0.79497 1.03606 1.01008 1.87846 1.21553 1.29479 1.95666 1.22604 0.92808 0.84227 1.01674 1.21345 0.93716 0.97193 1.02339 1.19816 0.83583 0.96983 1.05247 1.22529 0.99207 1.01407 0.94786 1.24204 0.82888 1.06726 1.05329 1.47860 1.09631 1.31522 1.18661 1.22281 0.78803 1.02127 0.95611 1.19668 0.94134 0.95917 0.95520 1.21106 0.98800 1.39290 0.97637 0.92455 1.25725 0.94687 0.94900 1.02554 1.69996 1.06619 1.42488 1.38543 0.85846 0.78978 0.78272 0.80644 1.19758 1.20304 1.18463 1.78291 1.14893 1.14412 1.03458 1.74957 0.96544 1.20952 1.24744 0.89073 0.93173 0.92772 0.92127 0.91088 0.92225 0.93037 0.89368 0.86530 0.75123 0.88459 0.85031 0.96169 0.96461 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.43 -8.63 10.70 -148.98 -1.59 -10.22 16 3 C 0.06 0.99 5.94 71.98 0.43 1.42 16 4 C -0.11 -2.16 5.56 30.59 0.17 -1.99 16 5 C -0.02 -0.31 5.79 29.85 0.17 -0.14 16 6 C -0.04 -1.09 6.50 41.60 0.27 -0.82 16 7 C -0.04 -1.02 11.49 83.49 0.96 -0.06 16 8 N -0.28 -9.71 3.44 -347.73 -1.20 -10.91 16 9 C 0.13 4.56 6.39 86.38 0.55 5.11 16 10 C -0.01 -0.63 4.17 29.85 0.12 -0.51 16 11 C -0.53 -28.43 9.66 25.60 0.25 -28.18 16 12 H 0.06 3.23 7.99 -2.91 -0.02 3.21 16 13 C 0.02 1.15 5.47 84.66 0.46 1.61 16 14 N -0.94 -56.22 13.96 21.45 0.30 -55.92 16 15 Si 0.94 44.37 27.47 68.60 1.88 46.26 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 19 N -0.13 -5.33 12.91 37.02 0.48 -4.85 16 20 N -0.31 -11.36 12.40 -48.59 -0.60 -11.97 16 21 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.12 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.23 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.13 3.72 8.07 -2.38 -0.02 3.70 16 33 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 34 H 0.02 0.82 7.54 -2.38 -0.02 0.81 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -71.36 302.20 4.90 -66.45 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.00 Total: 3.15 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.64 Total: -21.99 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.02 Total: -83.64 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.59 Total: -10.22 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -71.36 4.90 -66.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329244929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.745 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds