Wall clock time and date at job start Sun Mar 29 2020 22:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47380 * 2 1 4 4 C 1.50705 * 109.46719 * 240.00073 * 2 1 3 5 5 H 1.08004 * 119.99799 * 239.99560 * 4 2 1 6 6 C 1.37875 * 119.99985 * 60.00470 * 4 2 1 7 7 N 1.31511 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47370 * 89.99953 * 8 6 4 10 10 H 1.48503 * 109.47022 * 209.99733 * 8 6 4 11 11 H 1.48495 * 109.47427 * 329.99541 * 8 6 4 12 12 C 1.50699 * 109.47026 * 120.00612 * 2 1 3 13 13 O 1.21285 * 120.00162 * 120.00033 * 12 2 1 14 14 N 1.34782 * 119.99780 * 299.99472 * 12 2 1 15 15 C 1.51827 * 127.61114 * 0.34190 * 14 12 2 16 16 C 1.54389 * 102.86562 * 219.45480 * 15 14 12 17 17 H 1.09002 * 117.61856 * 116.40520 * 16 15 14 18 18 C 1.53001 * 118.11928 * 271.97804 * 16 15 14 19 19 C 1.53005 * 60.55669 * 93.13935 * 18 16 15 20 20 C 1.52998 * 119.53859 * 111.76549 * 19 18 16 21 21 O 1.42904 * 109.47151 * 109.29680 * 20 19 18 22 22 C 1.48147 * 127.83689 * 180.02562 * 14 12 2 23 23 H 1.09007 * 109.47411 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47140 * 299.99597 * 1 2 3 25 25 H 1.08995 * 109.47408 * 59.99924 * 1 2 3 26 26 H 0.97003 * 119.99712 * 180.02562 * 7 6 4 27 27 H 1.08997 * 110.21952 * 101.72187 * 15 14 12 28 28 H 1.09001 * 112.25708 * 338.13508 * 15 14 12 29 29 H 1.09003 * 117.43915 * 200.78588 * 18 16 15 30 30 H 1.09000 * 117.44429 * 345.53573 * 18 16 15 31 31 H 1.08999 * 109.47129 * 229.29136 * 20 19 18 32 32 H 1.08995 * 109.47617 * 349.29482 * 20 19 18 33 33 H 0.96696 * 113.99815 * 179.97438 * 21 20 19 34 34 H 1.09005 * 110.40757 * 21.63946 * 22 14 12 35 35 H 1.08991 * 110.40667 * 259.20245 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1614 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7067 -0.2501 2.4546 15 6 0.8464 0.9543 2.7930 16 6 1.5826 1.5743 4.0001 17 1 1.9981 2.5748 3.8792 18 6 1.2244 1.0704 5.3996 19 6 2.3916 0.4301 4.6456 20 6 3.8208 0.6380 5.1509 21 8 4.3164 -0.5867 5.6955 22 6 2.1011 -0.8071 3.7695 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.7081 1.1610 -3.4844 27 1 -0.1543 0.6332 3.0820 28 1 0.7949 1.6688 1.9714 29 1 1.4656 1.7170 6.2434 30 1 0.3120 0.4832 5.5039 31 1 4.4569 0.9511 4.3230 32 1 3.8249 1.4071 5.9232 33 1 5.2198 -0.5288 6.0354 34 1 2.9966 -1.4204 3.6693 35 1 1.2850 -1.3909 4.1951 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329263365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:37 Heat of formation + Delta-G solvation = -47.002212 kcal Electronic energy + Delta-G solvation = -17514.723680 eV Core-core repulsion = 14707.057069 eV Total energy + Delta-G solvation = -2807.666611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05143 -37.85212 -36.33289 -33.74942 -32.97214 -30.44407 -28.71010 -26.05303 -25.82202 -25.08209 -22.08635 -20.93932 -19.08867 -18.59632 -17.27686 -16.34197 -15.89185 -15.26446 -15.13548 -14.76410 -14.39385 -14.06740 -13.38009 -12.97450 -12.77122 -12.48410 -12.12911 -11.84547 -11.64422 -11.28633 -11.14106 -10.97753 -10.67361 -10.53789 -10.39956 -10.23575 -10.11437 -9.92442 -9.62220 -8.93353 -8.55113 -8.27766 -8.10993 -6.00589 -4.03318 3.35855 3.38610 3.41127 3.47424 3.60772 3.73768 4.09145 4.49199 4.61625 4.75195 4.81316 5.05985 5.18264 5.26360 5.32849 5.51833 5.62010 5.73305 5.80938 5.98270 6.01637 6.06146 6.17780 6.29691 6.64409 6.79092 6.91027 7.01283 7.52294 7.54486 7.78925 8.04357 8.19009 8.45063 9.05566 9.28257 9.61961 11.07108 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.006167 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.438435 B = 4539.545372 C = 4950.892108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.035 3.965 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.540 3.460 13 O -0.545 6.545 14 N -0.639 5.639 15 C 0.134 3.866 16 C -0.165 4.165 17 H 0.119 0.881 18 C -0.136 4.136 19 C -0.148 4.148 20 C 0.126 3.874 21 O -0.566 6.566 22 C 0.146 3.854 23 H 0.029 0.971 24 H 0.018 0.982 25 H 0.092 0.908 26 H 0.260 0.740 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.378 0.622 34 H 0.087 0.913 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 4.524 15.685 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.333 3.667 13 O -0.421 6.421 14 N -0.377 5.377 15 C 0.012 3.988 16 C -0.184 4.184 17 H 0.137 0.863 18 C -0.173 4.173 19 C -0.149 4.149 20 C 0.048 3.952 21 O -0.372 6.372 22 C 0.023 3.977 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.370 3.817 15.128 15.606 hybrid contribution 0.822 -0.017 -0.562 0.996 sum 1.191 3.800 14.566 15.101 Atomic orbital electron populations 1.21850 0.96536 0.99889 1.01161 1.18819 0.94204 0.96650 0.88879 0.93145 1.21172 1.30895 1.12775 0.89022 0.90828 1.24941 0.95151 0.95074 0.99069 1.69873 1.37219 1.23130 1.23476 0.86447 0.79483 0.79243 0.82025 1.20651 1.21298 1.19753 1.21806 0.78115 0.83957 0.82861 1.90544 1.38577 1.27191 1.85773 1.50482 1.52360 1.29866 1.04960 1.22495 0.92999 0.87850 0.95455 1.23853 1.03273 0.98154 0.93146 0.86275 1.23172 0.98345 1.01820 0.93981 1.22662 0.92680 0.96546 1.03058 1.21351 0.91951 0.85771 0.96121 1.86501 1.34543 1.34227 1.81888 1.21362 1.00823 0.93090 0.82435 0.95156 0.96325 0.88898 0.93004 0.90976 0.88508 0.88129 0.88537 0.93102 0.93492 0.77516 0.89436 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.73 37.16 0.32 -2.89 16 2 C 0.04 0.91 2.01 -92.92 -0.19 0.73 16 3 H 0.05 1.34 8.04 -51.93 -0.42 0.92 16 4 C -0.50 -14.61 8.37 -34.44 -0.29 -14.89 16 5 H 0.07 2.28 6.75 -52.48 -0.35 1.92 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.45 11.32 55.43 0.63 -24.83 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.54 13.25 7.27 -10.98 -0.08 13.17 16 13 O -0.55 -15.28 15.73 5.55 0.09 -15.19 16 14 N -0.64 -12.41 3.38 -166.17 -0.56 -12.97 16 15 C 0.13 2.02 5.19 -0.29 0.00 2.02 16 16 C -0.17 -2.02 6.94 -89.22 -0.62 -2.63 16 17 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.14 -1.41 9.81 -26.73 -0.26 -1.67 16 19 C -0.15 -1.96 2.74 -153.12 -0.42 -2.38 16 20 C 0.13 1.46 7.34 37.16 0.27 1.74 16 21 O -0.57 -6.80 13.08 -35.23 -0.46 -7.26 16 22 C 0.15 2.48 6.51 -2.42 -0.02 2.46 16 23 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 24 H 0.02 0.36 5.32 -51.93 -0.28 0.08 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 28 H 0.10 1.50 6.82 -51.93 -0.35 1.14 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.43 8.04 -51.93 -0.42 0.01 16 33 H 0.38 2.64 9.12 45.56 0.42 3.06 16 34 H 0.09 1.69 7.42 -51.93 -0.39 1.30 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -33.67 287.35 -6.56 -40.23 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.19 Total: 1.35 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.37 Total: -2.81 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.07 Total: -37.80 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.37 Total: -22.45 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.67 -6.56 -40.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329263365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.774 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds