Wall clock time and date at job start Sun Mar 29 2020 22:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47380 * 2 1 4 4 C 1.50705 * 109.46719 * 240.00073 * 2 1 3 5 5 H 1.08004 * 119.99799 * 239.99560 * 4 2 1 6 6 C 1.37875 * 119.99985 * 60.00470 * 4 2 1 7 7 N 1.31511 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47370 * 89.99953 * 8 6 4 10 10 H 1.48503 * 109.47022 * 209.99733 * 8 6 4 11 11 H 1.48495 * 109.47427 * 329.99541 * 8 6 4 12 12 C 1.50699 * 109.47026 * 120.00612 * 2 1 3 13 13 O 1.21285 * 120.00162 * 120.00033 * 12 2 1 14 14 N 1.34782 * 119.99780 * 299.99472 * 12 2 1 15 15 C 1.51827 * 127.61114 * 0.34190 * 14 12 2 16 16 C 1.54389 * 102.86562 * 219.45480 * 15 14 12 17 17 H 1.09002 * 117.61856 * 116.40520 * 16 15 14 18 18 C 1.53001 * 118.11928 * 271.97804 * 16 15 14 19 19 C 1.53005 * 60.55669 * 93.13935 * 18 16 15 20 20 C 1.52998 * 119.53859 * 111.76549 * 19 18 16 21 21 O 1.42904 * 109.47151 * 109.29680 * 20 19 18 22 22 C 1.48147 * 127.83689 * 180.02562 * 14 12 2 23 23 H 1.09007 * 109.47411 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47140 * 299.99597 * 1 2 3 25 25 H 1.08995 * 109.47408 * 59.99924 * 1 2 3 26 26 H 0.97003 * 119.99712 * 180.02562 * 7 6 4 27 27 H 1.08997 * 110.21952 * 101.72187 * 15 14 12 28 28 H 1.09001 * 112.25708 * 338.13508 * 15 14 12 29 29 H 1.09003 * 117.43915 * 200.78588 * 18 16 15 30 30 H 1.09000 * 117.44429 * 345.53573 * 18 16 15 31 31 H 1.08999 * 109.47129 * 229.29136 * 20 19 18 32 32 H 1.08995 * 109.47617 * 349.29482 * 20 19 18 33 33 H 0.96696 * 113.99815 * 179.97438 * 21 20 19 34 34 H 1.09005 * 110.40757 * 21.63946 * 22 14 12 35 35 H 1.08991 * 110.40667 * 259.20245 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1614 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7067 -0.2501 2.4546 15 6 0.8464 0.9543 2.7930 16 6 1.5826 1.5743 4.0001 17 1 1.9981 2.5748 3.8792 18 6 1.2244 1.0704 5.3996 19 6 2.3916 0.4301 4.6456 20 6 3.8208 0.6380 5.1509 21 8 4.3164 -0.5867 5.6955 22 6 2.1011 -0.8071 3.7695 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.7081 1.1610 -3.4844 27 1 -0.1543 0.6332 3.0820 28 1 0.7949 1.6688 1.9714 29 1 1.4656 1.7170 6.2434 30 1 0.3120 0.4832 5.5039 31 1 4.4569 0.9511 4.3230 32 1 3.8249 1.4071 5.9232 33 1 5.2198 -0.5288 6.0354 34 1 2.9966 -1.4204 3.6693 35 1 1.2850 -1.3909 4.1951 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329263365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:37 Heat of formation + Delta-G solvation = -72.224408 kcal Electronic energy + Delta-G solvation = -17515.817396 eV Core-core repulsion = 14707.057069 eV Total energy + Delta-G solvation = -2808.760327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35082 -39.51774 -37.29679 -35.84184 -34.47552 -32.43950 -29.88612 -27.48705 -27.22534 -26.86530 -23.91185 -21.99656 -20.30499 -20.16349 -18.38529 -18.21976 -17.54998 -16.93855 -16.48678 -16.15172 -15.90804 -15.55629 -14.85993 -14.50068 -14.34741 -13.94408 -13.49516 -13.24330 -13.21830 -12.95945 -12.74845 -12.61171 -12.40005 -12.24846 -12.15168 -12.01424 -11.30234 -11.14581 -11.06463 -10.68899 -10.51847 -10.25583 -9.69389 -8.17698 -6.28453 1.38874 1.39346 1.51591 1.86085 2.04798 2.42655 2.46651 3.11031 3.20744 3.57573 3.68137 3.86980 4.09228 4.15040 4.21695 4.41447 4.50956 4.65930 4.71751 4.75939 4.84465 4.87425 4.93342 4.95068 4.99583 5.09074 5.23386 5.30156 5.48249 5.70586 5.93441 6.19043 6.61114 6.79966 6.90794 7.36444 7.45223 8.88298 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.006167 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.438435 B = 4539.545372 C = 4950.892108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.535 3.465 13 O -0.597 6.597 14 N -0.638 5.638 15 C 0.123 3.877 16 C -0.161 4.161 17 H 0.139 0.861 18 C -0.100 4.100 19 C -0.169 4.169 20 C 0.127 3.873 21 O -0.589 6.589 22 C 0.141 3.859 23 H 0.017 0.983 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.266 0.734 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 6.108 17.415 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.014 3.986 3 H 0.057 0.943 4 C -0.573 4.573 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.195 1.195 11 H -0.206 1.206 12 C 0.327 3.673 13 O -0.477 6.477 14 N -0.373 5.373 15 C 0.003 3.997 16 C -0.180 4.180 17 H 0.157 0.843 18 C -0.137 4.137 19 C -0.171 4.171 20 C 0.049 3.951 21 O -0.397 6.397 22 C 0.019 3.981 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.152 0.848 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.072 0.928 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.547 5.452 16.912 17.778 hybrid contribution 1.091 -0.489 -1.026 1.576 sum 0.544 4.963 15.886 16.652 Atomic orbital electron populations 1.21659 0.94829 0.99285 1.02111 1.18708 0.95501 0.95548 0.88859 0.94318 1.21284 1.31890 1.12809 0.91293 0.93776 1.25588 0.95107 0.95742 1.01322 1.69937 1.36996 1.23401 1.24432 0.85577 0.78571 0.78621 0.79005 1.19826 1.19528 1.20619 1.21474 0.77992 0.83461 0.84360 1.90501 1.40965 1.29354 1.86893 1.50435 1.51717 1.30773 1.04382 1.22806 0.93712 0.86282 0.96898 1.23845 1.02781 0.98306 0.93098 0.84306 1.23338 0.96726 1.00292 0.93363 1.22682 0.95050 0.94708 1.04617 1.21397 0.90625 0.86399 0.96661 1.86450 1.36318 1.34939 1.82033 1.21465 0.99732 0.94954 0.81926 0.96368 0.92355 0.90814 0.92431 0.88830 0.89039 0.84755 0.87709 0.94742 0.89871 0.75260 0.92779 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.73 71.98 0.63 -5.10 16 2 C 0.03 1.85 2.01 -12.29 -0.02 1.83 16 3 H 0.04 2.12 8.04 -2.39 -0.02 2.10 16 4 C -0.53 -32.41 8.37 25.60 0.21 -32.20 16 5 H 0.04 2.88 6.75 -2.91 -0.02 2.86 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -51.65 11.32 21.45 0.24 -51.41 16 8 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 12 C 0.54 27.25 7.27 87.66 0.64 27.89 16 13 O -0.60 -35.40 15.73 -3.05 -0.05 -35.45 16 14 N -0.64 -24.85 3.38 -798.02 -2.69 -27.54 16 15 C 0.12 3.46 5.19 85.80 0.45 3.90 16 16 C -0.16 -3.38 6.94 -9.88 -0.07 -3.44 16 17 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 18 C -0.10 -1.59 9.81 30.60 0.30 -1.28 16 19 C -0.17 -4.07 2.74 -51.28 -0.14 -4.21 16 20 C 0.13 2.66 7.34 71.98 0.53 3.19 16 21 O -0.59 -13.38 13.08 -148.98 -1.95 -15.33 16 22 C 0.14 4.77 6.51 86.52 0.56 5.33 16 23 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.06 2.22 5.32 -2.39 -0.01 2.21 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 28 H 0.09 2.67 6.82 -2.39 -0.02 2.66 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 33 H 0.40 5.03 9.12 -74.06 -0.68 4.36 16 34 H 0.05 2.17 7.42 -2.38 -0.02 2.15 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -76.14 287.35 1.53 -74.61 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.42 Total: 9.49 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 3.53 Total: -2.39 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.45 Total: -78.95 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -2.00 Total: -50.77 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.14 1.53 -74.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329263365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.385 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds