Wall clock time and date at job start Sun Mar 29 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30277 * 126.28289 * 2 1 4 4 N 1.28665 * 109.38457 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37968 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28327 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46796 * 90.02793 * 6 5 4 8 8 C 1.46902 * 111.00283 * 66.04964 * 7 6 5 9 9 C 1.46906 * 110.99888 * 189.99926 * 7 6 5 10 10 C 1.53000 * 109.47072 * 170.00122 * 9 7 6 11 11 C 1.52996 * 109.47188 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47567 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00401 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99940 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00290 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46970 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47088 * 119.99589 * 16 14 12 19 19 H 1.48502 * 109.47250 * 239.99885 * 16 14 12 20 20 O 1.34362 * 126.28570 * 180.27900 * 2 1 3 21 21 H 1.09004 * 109.46794 * 89.97760 * 1 2 3 22 22 H 1.09000 * 109.47177 * 209.97739 * 1 2 3 23 23 H 1.08991 * 109.47200 * 329.98127 * 1 2 3 24 24 H 1.08999 * 109.47012 * 330.03223 * 6 5 4 25 25 H 1.08996 * 109.47316 * 210.02495 * 6 5 4 26 26 H 1.09004 * 109.47457 * 183.95363 * 8 7 6 27 27 H 1.09001 * 109.46615 * 303.95014 * 8 7 6 28 28 H 1.08990 * 109.47358 * 63.94680 * 8 7 6 29 29 H 1.08993 * 109.47164 * 289.99976 * 9 7 6 30 30 H 1.08996 * 109.46920 * 50.00010 * 9 7 6 31 31 H 1.09002 * 109.46936 * 299.99708 * 10 9 7 32 32 H 1.08996 * 109.47340 * 60.00144 * 10 9 7 33 33 H 1.08999 * 109.47452 * 300.00348 * 11 10 9 34 34 H 1.09012 * 109.47215 * 59.99738 * 11 10 9 35 35 H 0.96999 * 120.00082 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 7 5.2245 -1.7357 1.3869 8 6 4.2368 -2.5826 2.0690 9 6 6.5609 -2.3438 1.4333 10 6 7.0533 -2.3831 2.8814 11 6 8.4454 -3.0159 2.9297 12 6 8.9307 -3.0541 4.3559 13 1 8.3086 -2.6655 5.1486 14 6 10.1694 -3.5842 4.6487 15 7 10.9272 -4.0570 3.6835 16 14 10.7706 -3.6322 6.4167 17 1 9.7380 -3.0435 7.3068 18 1 11.0241 -5.0400 6.8153 19 1 12.0279 -2.8506 6.5334 20 8 2.3022 -1.0831 -0.0053 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8897 0.5141 24 1 5.6148 -0.9265 -0.5121 25 1 4.6246 -2.4056 -0.5117 26 1 4.5265 -2.7106 3.1121 27 1 3.2563 -2.1089 2.0198 28 1 4.1947 -3.5564 1.5815 29 1 6.5123 -3.3586 1.0385 30 1 7.2504 -1.7523 0.8311 31 1 7.1020 -1.3683 3.2763 32 1 6.3638 -2.9747 3.4837 33 1 8.3973 -4.0307 2.5347 34 1 9.1348 -2.4240 2.3275 35 1 11.7984 -4.4303 3.8895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330577814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:36 Heat of formation + Delta-G solvation = 30.674232 kcal Electronic energy + Delta-G solvation = -16479.606855 eV Core-core repulsion = 13707.601299 eV Total energy + Delta-G solvation = -2772.005556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.31999 -37.86670 -36.25459 -33.99706 -33.06532 -31.48225 -29.51708 -27.28033 -26.94111 -24.62777 -22.83511 -22.49379 -21.33815 -19.96967 -17.66584 -17.19586 -16.35047 -15.59260 -15.33775 -15.21673 -14.79608 -14.36155 -13.76001 -13.52282 -13.38494 -12.99913 -12.50363 -12.39086 -12.11808 -11.91614 -11.83314 -11.61926 -11.31774 -11.04776 -10.84766 -10.60136 -10.51629 -9.71822 -9.63317 -9.35088 -9.06896 -8.36890 -8.33639 -5.99983 -4.01867 1.00187 2.09307 2.28701 3.31751 3.39276 3.43846 3.62976 4.03362 4.21263 4.47329 4.61440 4.89652 4.99345 5.06083 5.23687 5.26410 5.31811 5.36260 5.47709 5.49880 5.56324 5.69441 5.84066 5.98635 6.21418 6.60670 6.63654 6.95284 7.14414 7.18387 7.67704 7.81438 8.00206 8.22432 8.43438 9.05393 9.62353 11.11521 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059868 B = 0.003639 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.585958 B = 7691.568101 C = 7804.852244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.153 3.847 3 N -0.290 5.290 4 N -0.272 5.272 5 C 0.181 3.819 6 C 0.147 3.853 7 N -0.537 5.537 8 C 0.020 3.980 9 C 0.058 3.942 10 C -0.105 4.105 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 O -0.228 6.228 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.123 0.877 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.483 3.568 -9.107 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.058 4.058 3 N -0.138 5.138 4 N -0.119 5.119 5 C -0.031 4.031 6 C 0.018 3.982 7 N -0.263 5.263 8 C -0.128 4.128 9 C -0.068 4.068 10 C -0.143 4.143 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 O -0.108 6.108 21 H 0.115 0.885 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.141 0.859 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.915 5.165 -8.897 21.532 hybrid contribution 0.000 -2.042 0.545 2.114 sum -18.915 3.123 -8.352 20.912 Atomic orbital electron populations 1.20319 0.80369 1.05649 1.05045 1.27984 0.97806 0.79872 1.00179 1.74413 0.96262 1.25720 1.17369 1.74416 1.11735 1.09271 1.16449 1.27953 0.84719 0.91662 0.98767 1.20569 0.88012 0.96724 0.92922 1.62056 1.04107 1.48152 1.11964 1.22497 0.94854 0.94619 1.00869 1.22387 0.86597 0.96784 1.01051 1.21678 0.99368 1.01309 0.91982 1.19079 0.89755 0.95595 0.97144 1.21279 1.01632 1.39470 0.93262 0.92609 1.25024 0.96860 0.95474 0.97157 1.69970 1.10856 1.41158 1.31611 0.86542 0.78769 0.77611 0.85128 1.19717 1.21065 1.20995 1.84790 1.17816 1.38429 1.69756 0.88488 0.88983 0.87606 0.85929 0.91521 0.89792 0.92671 0.95087 0.94533 0.90471 0.92328 0.93297 0.96749 0.96451 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.01 0.38 0.07 16 2 C 0.15 1.72 8.48 -12.94 -0.11 1.61 16 3 N -0.29 -4.23 12.22 32.55 0.40 -3.84 16 4 N -0.27 -4.33 12.22 32.55 0.40 -3.93 16 5 C 0.18 2.48 7.03 -12.94 -0.09 2.39 16 6 C 0.15 1.81 5.59 -4.98 -0.03 1.78 16 7 N -0.54 -7.95 4.75 -244.37 -1.16 -9.11 16 8 C 0.02 0.27 9.15 60.07 0.55 0.82 16 9 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 10 C -0.11 -2.14 5.08 -26.73 -0.14 -2.28 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 12 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 O -0.23 -2.84 10.19 5.38 0.05 -2.78 16 21 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.12 1.38 7.93 -51.93 -0.41 0.97 16 25 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 26 H 0.08 1.20 6.47 -51.93 -0.34 0.87 16 27 H 0.05 0.72 6.64 -51.93 -0.34 0.37 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.08 1.23 7.93 -51.93 -0.41 0.81 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.97 6.55 -51.93 -0.34 0.63 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -33.24 298.68 -5.29 -38.52 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -5.19 Total: -6.14 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 0.00 Total: -7.77 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.37 Total: -43.07 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.05 Total: -2.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.24 -5.29 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330577814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.198 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds