Wall clock time and date at job start Sun Mar 29 2020 22:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30277 * 126.28289 * 2 1 4 4 N 1.28665 * 109.38457 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37968 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28327 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46796 * 90.02793 * 6 5 4 8 8 C 1.46902 * 111.00283 * 66.04964 * 7 6 5 9 9 C 1.46906 * 110.99888 * 189.99926 * 7 6 5 10 10 C 1.53000 * 109.47072 * 170.00122 * 9 7 6 11 11 C 1.52996 * 109.47188 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47567 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00401 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99940 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00290 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46970 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47088 * 119.99589 * 16 14 12 19 19 H 1.48502 * 109.47250 * 239.99885 * 16 14 12 20 20 O 1.34362 * 126.28570 * 180.27900 * 2 1 3 21 21 H 1.09004 * 109.46794 * 89.97760 * 1 2 3 22 22 H 1.09000 * 109.47177 * 209.97739 * 1 2 3 23 23 H 1.08991 * 109.47200 * 329.98127 * 1 2 3 24 24 H 1.08999 * 109.47012 * 330.03223 * 6 5 4 25 25 H 1.08996 * 109.47316 * 210.02495 * 6 5 4 26 26 H 1.09004 * 109.47457 * 183.95363 * 8 7 6 27 27 H 1.09001 * 109.46615 * 303.95014 * 8 7 6 28 28 H 1.08990 * 109.47358 * 63.94680 * 8 7 6 29 29 H 1.08993 * 109.47164 * 289.99976 * 9 7 6 30 30 H 1.08996 * 109.46920 * 50.00010 * 9 7 6 31 31 H 1.09002 * 109.46936 * 299.99708 * 10 9 7 32 32 H 1.08996 * 109.47340 * 60.00144 * 10 9 7 33 33 H 1.08999 * 109.47452 * 300.00348 * 11 10 9 34 34 H 1.09012 * 109.47215 * 59.99738 * 11 10 9 35 35 H 0.96999 * 120.00082 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 7 5.2245 -1.7357 1.3869 8 6 4.2368 -2.5826 2.0690 9 6 6.5609 -2.3438 1.4333 10 6 7.0533 -2.3831 2.8814 11 6 8.4454 -3.0159 2.9297 12 6 8.9307 -3.0541 4.3559 13 1 8.3086 -2.6655 5.1486 14 6 10.1694 -3.5842 4.6487 15 7 10.9272 -4.0570 3.6835 16 14 10.7706 -3.6322 6.4167 17 1 9.7380 -3.0435 7.3068 18 1 11.0241 -5.0400 6.8153 19 1 12.0279 -2.8506 6.5334 20 8 2.3022 -1.0831 -0.0053 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8897 0.5141 24 1 5.6148 -0.9265 -0.5121 25 1 4.6246 -2.4056 -0.5117 26 1 4.5265 -2.7106 3.1121 27 1 3.2563 -2.1089 2.0198 28 1 4.1947 -3.5564 1.5815 29 1 6.5123 -3.3586 1.0385 30 1 7.2504 -1.7523 0.8311 31 1 7.1020 -1.3683 3.2763 32 1 6.3638 -2.9747 3.4837 33 1 8.3973 -4.0307 2.5347 34 1 9.1348 -2.4240 2.3275 35 1 11.7984 -4.4303 3.8895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330577814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:35 Heat of formation + Delta-G solvation = 3.658942 kcal Electronic energy + Delta-G solvation = -16480.778326 eV Core-core repulsion = 13707.601299 eV Total energy + Delta-G solvation = -2773.177027 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.28610 -39.06235 -37.24380 -35.79839 -34.22047 -33.12421 -30.49344 -28.76458 -28.04092 -26.16792 -24.10769 -23.53456 -22.62097 -21.56342 -18.69615 -18.42325 -18.14074 -16.73267 -16.70262 -16.41606 -16.10943 -15.69444 -15.10535 -14.54374 -14.17650 -14.00433 -13.66405 -13.55921 -13.48557 -13.29668 -13.07383 -12.92921 -12.79407 -12.61848 -12.41311 -12.28378 -11.98842 -11.44187 -11.37294 -11.14013 -10.58974 -10.53748 -9.48028 -8.19442 -6.29526 0.07686 1.20344 1.30268 1.40135 1.41032 1.54034 2.41528 2.73815 2.97891 3.14076 3.40031 3.81972 4.04509 4.09289 4.26802 4.31306 4.37752 4.49092 4.54959 4.57191 4.59903 4.72068 4.73184 4.86959 4.98547 5.05532 5.07523 5.25409 5.53420 5.74714 5.85392 5.89076 5.91997 6.28472 6.87486 7.24465 7.39544 8.92496 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059868 B = 0.003639 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.585958 B = 7691.568101 C = 7804.852244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.169 3.831 3 N -0.333 5.333 4 N -0.309 5.309 5 C 0.178 3.822 6 C 0.149 3.851 7 N -0.552 5.552 8 C 0.023 3.977 9 C 0.071 3.929 10 C -0.092 4.092 11 C 0.026 3.974 12 C -0.542 4.542 13 H 0.056 0.944 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.962 3.038 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.279 1.279 20 O -0.230 6.230 21 H 0.122 0.878 22 H 0.114 0.886 23 H 0.117 0.883 24 H 0.130 0.870 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.052 0.948 33 H -0.004 1.004 34 H -0.005 1.005 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.109 3.185 -8.900 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 N -0.179 5.179 4 N -0.155 5.155 5 C -0.035 4.035 6 C 0.021 3.979 7 N -0.278 5.278 8 C -0.125 4.125 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.011 4.011 12 C -0.580 4.580 13 H 0.074 0.926 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.787 3.213 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.204 1.204 20 O -0.109 6.109 21 H 0.140 0.860 22 H 0.132 0.868 23 H 0.136 0.864 24 H 0.148 0.852 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.565 4.803 -8.695 22.838 hybrid contribution 0.409 -1.917 0.445 2.010 sum -20.156 2.886 -8.250 21.970 Atomic orbital electron populations 1.20729 0.76317 1.07283 1.07069 1.29126 0.99493 0.78807 0.96765 1.74345 0.96307 1.27281 1.19985 1.74332 1.12911 1.10560 1.17671 1.28055 0.85488 0.91267 0.98708 1.20651 0.87885 0.97833 0.91581 1.61885 1.03544 1.48425 1.13954 1.22470 0.94627 0.95243 1.00190 1.22081 0.87764 0.97632 0.98080 1.21414 0.96575 0.99945 0.95044 1.18966 0.92233 0.94530 0.95416 1.21723 1.02145 1.39521 0.94634 0.92560 1.25938 0.97065 0.94964 1.01777 1.70086 1.11343 1.41879 1.33933 0.85437 0.78280 0.77940 0.79625 1.18832 1.20232 1.20424 1.84810 1.17499 1.38729 1.69907 0.86023 0.86787 0.86413 0.85170 0.88899 0.91001 0.92155 0.93637 0.93630 0.90136 0.93440 0.92954 0.98546 0.98690 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 2 C 0.17 3.51 8.48 88.34 0.75 4.26 16 3 N -0.33 -9.53 12.22 -165.50 -2.02 -11.55 16 4 N -0.31 -9.76 12.22 -165.50 -2.02 -11.78 16 5 C 0.18 4.68 7.03 88.34 0.62 5.30 16 6 C 0.15 3.43 5.59 85.56 0.48 3.91 16 7 N -0.55 -15.66 4.75 -927.06 -4.41 -20.06 16 8 C 0.02 0.58 9.15 127.69 1.17 1.74 16 9 C 0.07 2.27 4.96 86.30 0.43 2.70 16 10 C -0.09 -3.75 5.08 30.59 0.16 -3.59 16 11 C 0.03 1.36 4.97 29.85 0.15 1.51 16 12 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 14 C 0.00 0.01 5.46 84.65 0.46 0.48 16 15 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 16 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 O -0.23 -5.28 10.19 -3.65 -0.04 -5.32 16 21 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.13 2.76 7.93 -2.39 -0.02 2.74 16 25 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 26 H 0.07 1.99 6.47 -2.38 -0.02 1.97 16 27 H 0.06 1.47 6.64 -2.39 -0.02 1.45 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 30 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.08 6.55 -2.39 -0.02 2.06 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.34 298.68 0.08 -72.26 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: 1.07 Total: 0.37 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.19 Total: -14.22 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -8.17 Total: -99.68 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.04 Total: -5.32 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.34 0.08 -72.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330577814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.916 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds