Wall clock time and date at job start Sun Mar 29 2020 22:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 C 1.50701 * 109.47089 * 240.00505 * 2 1 3 5 5 H 1.08004 * 119.99940 * 275.11621 * 4 2 1 6 6 C 1.37878 * 120.00323 * 95.11314 * 4 2 1 7 7 N 1.31515 * 120.00303 * 184.89981 * 6 4 2 8 8 Si 1.86797 * 119.99725 * 4.90256 * 6 4 2 9 9 H 1.48495 * 109.47590 * 84.79991 * 8 6 4 10 10 H 1.48504 * 109.47106 * 204.80122 * 8 6 4 11 11 H 1.48505 * 109.47481 * 324.79704 * 8 6 4 12 12 C 1.50701 * 109.47247 * 120.00292 * 2 1 3 13 13 O 1.21281 * 119.99603 * 120.00189 * 12 2 1 14 14 N 1.34770 * 120.00169 * 299.72385 * 12 2 1 15 15 C 1.47269 * 136.20327 * 359.97438 * 14 12 2 16 16 C 1.53668 * 88.21936 * 206.24000 * 15 14 12 17 17 C 1.46011 * 136.21020 * 179.63133 * 14 12 2 18 18 C 1.53938 * 115.50343 * 35.68580 * 17 14 12 19 19 C 1.55203 * 101.83207 * 210.45236 * 18 17 14 20 20 O 1.44459 * 103.62743 * 36.28035 * 19 18 17 21 21 C 1.44010 * 107.03562 * 320.49464 * 20 19 18 22 22 H 1.08999 * 109.47495 * 295.15022 * 1 2 3 23 23 H 1.08997 * 109.47687 * 55.14876 * 1 2 3 24 24 H 1.09008 * 109.47334 * 175.15368 * 1 2 3 25 25 H 0.96992 * 120.00076 * 180.02562 * 7 6 4 26 26 H 1.08997 * 113.43249 * 321.08319 * 15 14 12 27 27 H 1.08998 * 113.42462 * 91.40054 * 15 14 12 28 28 H 1.08998 * 114.28429 * 88.33087 * 16 15 14 29 29 H 1.08997 * 114.28426 * 221.24917 * 16 15 14 30 30 H 1.09003 * 110.95587 * 328.58320 * 18 17 14 31 31 H 1.08998 * 110.95739 * 92.31494 * 18 17 14 32 32 H 1.09006 * 110.59338 * 277.74159 * 19 18 17 33 33 H 1.09000 * 110.72246 * 154.88194 * 19 18 17 34 34 H 1.09009 * 109.97187 * 266.90945 * 21 20 19 35 35 H 1.08998 * 110.00469 * 145.66253 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.1336 -1.7856 -1.2298 6 6 2.3624 0.0125 -2.3573 7 7 2.7084 -0.6125 -3.4615 8 14 2.3183 1.8794 -2.3155 9 1 3.6036 2.3931 -1.7778 10 1 2.1134 2.4007 -3.6908 11 1 1.2025 2.3289 -1.4446 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1190 14 7 1.7113 -0.2469 2.4545 15 6 0.9261 0.8763 2.9936 16 6 1.7998 0.8185 4.2564 17 6 1.9829 -0.6388 3.8346 18 6 3.3797 -1.2321 4.0925 19 6 3.0990 -2.2084 5.2659 20 8 1.7875 -2.7340 4.9651 21 6 1.0023 -1.6409 4.4526 22 1 -0.3634 0.4367 0.9302 23 1 -0.3634 0.5872 -0.8433 24 1 -0.3634 -1.0240 -0.0868 25 1 2.9410 -0.1041 -4.2541 26 1 1.0445 1.7996 2.4265 27 1 -0.1186 0.6258 3.1775 28 1 2.7060 1.4217 4.2025 29 1 1.2496 0.9471 5.1884 30 1 3.7427 -1.7697 3.2165 31 1 4.0840 -0.4557 4.3913 32 1 3.0892 -1.6736 6.2157 33 1 3.8378 -3.0096 5.2861 34 1 0.4485 -1.1679 5.2636 35 1 0.3110 -2.0030 3.6917 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331217592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:22 Heat of formation + Delta-G solvation = -41.726567 kcal Electronic energy + Delta-G solvation = -17929.811965 eV Core-core repulsion = 15122.374123 eV Total energy + Delta-G solvation = -2807.437841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99103 -38.15600 -36.82367 -33.66786 -31.56336 -30.67569 -29.18958 -27.96991 -25.29777 -23.56425 -23.14222 -22.04535 -20.38198 -17.95552 -17.10480 -16.42826 -16.07664 -15.51137 -15.33717 -14.88321 -14.36072 -13.93374 -13.76340 -13.09836 -12.95763 -12.49691 -12.46275 -12.08389 -11.92661 -11.56525 -11.40123 -11.35141 -11.19128 -11.06773 -10.77134 -10.39060 -10.19426 -9.83097 -9.72714 -9.17840 -8.67044 -8.52700 -8.24199 -6.08316 -4.07791 3.18623 3.24074 3.28482 3.31362 3.55001 3.93147 4.25767 4.36311 4.60623 4.84754 4.98200 5.09295 5.13402 5.17416 5.26054 5.38245 5.50087 5.64076 5.66999 5.71218 5.77458 5.86244 6.12211 6.13914 6.18296 6.35334 6.48331 6.58777 6.82832 6.88421 7.17439 7.55730 8.26818 8.52232 9.07397 9.11288 9.50893 11.04961 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.007305 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.574166 B = 3831.868925 C = 4086.423386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.004 3.996 3 H 0.053 0.947 4 C -0.497 4.497 5 H 0.086 0.914 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.549 3.451 13 O -0.520 6.520 14 N -0.643 5.643 15 C 0.100 3.900 16 C -0.142 4.142 17 C 0.121 3.879 18 C -0.161 4.161 19 C 0.050 3.950 20 O -0.375 6.375 21 C 0.053 3.947 22 H 0.028 0.972 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.265 0.735 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 5.675 17.785 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.017 4.017 3 H 0.071 0.929 4 C -0.535 4.535 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.698 3.302 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.190 1.190 12 C 0.341 3.659 13 O -0.393 6.393 14 N -0.382 5.382 15 C -0.023 4.023 16 C -0.179 4.179 17 C 0.034 3.966 18 C -0.199 4.199 19 C -0.027 4.027 20 O -0.294 6.294 21 C -0.025 4.025 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.071 4.828 17.245 18.170 hybrid contribution 0.048 1.265 -0.179 1.279 sum -3.022 6.094 17.067 18.372 Atomic orbital electron populations 1.21957 0.96768 1.01318 0.99143 1.19287 0.94089 0.96835 0.91534 0.92911 1.20762 1.43152 0.96206 0.93338 0.89605 1.25021 0.94610 0.98016 0.95319 1.69880 1.45865 1.35696 1.01675 0.86960 0.78966 0.86736 0.77500 1.20122 1.21154 1.18971 1.21617 0.78733 0.83884 0.81658 1.90585 1.37288 1.26214 1.85208 1.50013 1.53628 1.30927 1.03585 1.22888 0.95799 0.91246 0.92404 1.23449 1.01327 0.94946 0.98227 1.22527 0.95411 0.94962 0.83725 1.23296 0.96326 0.99752 1.00497 1.23536 0.85326 0.97269 0.96582 1.88941 1.23799 1.32423 1.84208 1.23202 0.93808 0.87699 0.97791 0.95333 0.92701 0.93025 0.92499 0.90264 0.90172 0.88456 0.89527 0.88017 0.89950 0.92292 0.88986 0.91414 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.11 37.15 0.34 -2.40 16 2 C 0.00 0.10 2.18 -92.93 -0.20 -0.10 16 3 H 0.05 1.23 5.29 -51.93 -0.27 0.95 16 4 C -0.50 -14.50 8.36 -34.44 -0.29 -14.78 16 5 H 0.09 2.85 7.61 -52.48 -0.40 2.45 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -27.72 13.96 55.43 0.77 -26.94 16 8 Si 0.87 21.04 26.99 -169.99 -4.59 16.45 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -5.89 6.82 56.52 0.39 -5.50 16 12 C 0.55 12.63 7.33 -10.99 -0.08 12.55 16 13 O -0.52 -14.06 14.97 5.56 0.08 -13.97 16 14 N -0.64 -11.21 3.41 -173.93 -0.59 -11.80 16 15 C 0.10 1.24 6.52 -10.16 -0.07 1.17 16 16 C -0.14 -1.44 7.70 -26.48 -0.20 -1.64 16 17 C 0.12 1.70 1.34 -138.47 -0.19 1.51 16 18 C -0.16 -2.30 6.65 -25.08 -0.17 -2.47 16 19 C 0.05 0.62 7.73 38.32 0.30 0.91 16 20 O -0.38 -5.77 11.54 -35.23 -0.41 -6.18 16 21 C 0.05 0.72 7.11 37.27 0.26 0.99 16 22 H 0.03 0.47 6.21 -51.93 -0.32 0.15 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 28 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 29 H 0.09 0.63 7.89 -51.93 -0.41 0.22 16 30 H 0.10 1.89 6.56 -51.93 -0.34 1.55 16 31 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.70 7.77 -51.92 -0.40 0.30 16 35 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 283.83 15.07 4.28 4.28 Total: -1.00 -34.62 283.83 -5.93 -40.55 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.08 Total: -0.12 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.39 Total: -2.26 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.18 Total: -38.75 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.32 Total: -20.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.59 Total: 16.45 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.62 -5.93 -40.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331217592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.177 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds