Wall clock time and date at job start Sun Mar 29 2020 22:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 C 1.50701 * 109.47089 * 240.00505 * 2 1 3 5 5 H 1.08004 * 119.99940 * 275.11621 * 4 2 1 6 6 C 1.37878 * 120.00323 * 95.11314 * 4 2 1 7 7 N 1.31515 * 120.00303 * 184.89981 * 6 4 2 8 8 Si 1.86797 * 119.99725 * 4.90256 * 6 4 2 9 9 H 1.48495 * 109.47590 * 84.79991 * 8 6 4 10 10 H 1.48504 * 109.47106 * 204.80122 * 8 6 4 11 11 H 1.48505 * 109.47481 * 324.79704 * 8 6 4 12 12 C 1.50701 * 109.47247 * 120.00292 * 2 1 3 13 13 O 1.21281 * 119.99603 * 120.00189 * 12 2 1 14 14 N 1.34770 * 120.00169 * 299.72385 * 12 2 1 15 15 C 1.47269 * 136.20327 * 359.97438 * 14 12 2 16 16 C 1.53668 * 88.21936 * 206.24000 * 15 14 12 17 17 C 1.46011 * 136.21020 * 179.63133 * 14 12 2 18 18 C 1.53938 * 115.50343 * 35.68580 * 17 14 12 19 19 C 1.55203 * 101.83207 * 210.45236 * 18 17 14 20 20 O 1.44459 * 103.62743 * 36.28035 * 19 18 17 21 21 C 1.44010 * 107.03562 * 320.49464 * 20 19 18 22 22 H 1.08999 * 109.47495 * 295.15022 * 1 2 3 23 23 H 1.08997 * 109.47687 * 55.14876 * 1 2 3 24 24 H 1.09008 * 109.47334 * 175.15368 * 1 2 3 25 25 H 0.96992 * 120.00076 * 180.02562 * 7 6 4 26 26 H 1.08997 * 113.43249 * 321.08319 * 15 14 12 27 27 H 1.08998 * 113.42462 * 91.40054 * 15 14 12 28 28 H 1.08998 * 114.28429 * 88.33087 * 16 15 14 29 29 H 1.08997 * 114.28426 * 221.24917 * 16 15 14 30 30 H 1.09003 * 110.95587 * 328.58320 * 18 17 14 31 31 H 1.08998 * 110.95739 * 92.31494 * 18 17 14 32 32 H 1.09006 * 110.59338 * 277.74159 * 19 18 17 33 33 H 1.09000 * 110.72246 * 154.88194 * 19 18 17 34 34 H 1.09009 * 109.97187 * 266.90945 * 21 20 19 35 35 H 1.08998 * 110.00469 * 145.66253 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.1336 -1.7856 -1.2298 6 6 2.3624 0.0125 -2.3573 7 7 2.7084 -0.6125 -3.4615 8 14 2.3183 1.8794 -2.3155 9 1 3.6036 2.3931 -1.7778 10 1 2.1134 2.4007 -3.6908 11 1 1.2025 2.3289 -1.4446 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1190 14 7 1.7113 -0.2469 2.4545 15 6 0.9261 0.8763 2.9936 16 6 1.7998 0.8185 4.2564 17 6 1.9829 -0.6388 3.8346 18 6 3.3797 -1.2321 4.0925 19 6 3.0990 -2.2084 5.2659 20 8 1.7875 -2.7340 4.9651 21 6 1.0023 -1.6409 4.4526 22 1 -0.3634 0.4367 0.9302 23 1 -0.3634 0.5872 -0.8433 24 1 -0.3634 -1.0240 -0.0868 25 1 2.9410 -0.1041 -4.2541 26 1 1.0445 1.7996 2.4265 27 1 -0.1186 0.6258 3.1775 28 1 2.7060 1.4217 4.2025 29 1 1.2496 0.9471 5.1884 30 1 3.7427 -1.7697 3.2165 31 1 4.0840 -0.4557 4.3913 32 1 3.0892 -1.6736 6.2157 33 1 3.8378 -3.0096 5.2861 34 1 0.4485 -1.1679 5.2636 35 1 0.3110 -2.0030 3.6917 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331217592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:22 Heat of formation + Delta-G solvation = -68.957592 kcal Electronic energy + Delta-G solvation = -17930.992791 eV Core-core repulsion = 15122.374123 eV Total energy + Delta-G solvation = -2808.618667 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.15560 -39.66650 -38.13417 -35.67795 -33.54127 -31.88792 -30.51074 -28.97246 -27.30752 -24.77191 -24.55151 -23.08027 -21.91293 -19.27238 -19.12936 -17.68362 -17.60519 -16.99313 -16.44754 -16.22296 -15.88835 -15.29797 -15.17251 -14.72225 -14.40910 -14.21563 -13.87377 -13.39993 -13.07887 -13.00148 -12.81246 -12.70254 -12.56589 -12.48015 -12.19372 -12.08483 -11.78327 -11.32097 -11.29028 -10.79756 -10.75747 -10.31382 -9.59521 -8.31521 -6.39020 1.31257 1.35594 1.46103 1.77171 1.98431 2.31930 2.92288 3.02874 3.27448 3.61034 3.83230 3.89467 4.01441 4.08480 4.25386 4.34597 4.45833 4.51507 4.67525 4.69411 4.70324 4.74773 4.80330 4.85764 4.95023 4.97149 5.09132 5.26865 5.31948 5.49559 5.53551 5.82617 6.24604 6.64495 6.89777 7.22811 7.45423 8.86867 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.007305 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.574166 B = 3831.868925 C = 4086.423386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.002 3.998 3 H 0.069 0.931 4 C -0.512 4.512 5 H 0.017 0.983 6 C 0.005 3.995 7 N -0.952 5.952 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.222 1.222 12 C 0.542 3.458 13 O -0.586 6.586 14 N -0.650 5.650 15 C 0.088 3.912 16 C -0.109 4.109 17 C 0.106 3.894 18 C -0.167 4.167 19 C 0.053 3.947 20 O -0.408 6.408 21 C 0.053 3.947 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.268 0.732 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 9.776 21.339 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.551 4.551 5 H 0.035 0.965 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.145 1.145 12 C 0.334 3.666 13 O -0.465 6.465 14 N -0.386 5.386 15 C -0.033 4.033 16 C -0.147 4.147 17 C 0.020 3.980 18 C -0.205 4.205 19 C -0.023 4.023 20 O -0.327 6.327 21 C -0.024 4.024 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.730 8.965 20.881 23.211 hybrid contribution 0.571 -0.149 -1.209 1.345 sum -4.159 8.815 19.672 21.955 Atomic orbital electron populations 1.21816 0.93865 1.00762 1.01805 1.19224 0.96192 0.96691 0.89866 0.91287 1.20895 1.43995 0.93612 0.96559 0.96506 1.26136 0.93748 1.05038 0.94234 1.70079 1.47639 1.38566 1.02822 0.85713 0.80608 0.77968 0.78568 1.19374 1.20699 1.14456 1.21270 0.78503 0.83203 0.83650 1.90557 1.40310 1.28971 1.86634 1.49938 1.53209 1.32172 1.03280 1.23415 0.97167 0.89692 0.93029 1.23427 1.01591 0.90609 0.99038 1.23050 0.95184 0.98123 0.81654 1.23294 0.97367 1.00555 0.99270 1.23701 0.84128 0.97157 0.97314 1.88901 1.25163 1.34164 1.84502 1.23331 0.93291 0.87166 0.98660 0.90579 0.92246 0.95000 0.92283 0.89019 0.87396 0.87544 0.84793 0.93592 0.87487 0.88066 0.89125 0.86685 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.11 71.98 0.66 -4.24 16 2 C 0.00 0.09 2.18 -12.29 -0.03 0.06 16 3 H 0.07 3.04 5.29 -2.39 -0.01 3.03 16 4 C -0.51 -31.70 8.36 25.60 0.21 -31.49 16 5 H 0.02 1.22 7.61 -2.91 -0.02 1.20 16 6 C 0.00 0.30 5.47 84.65 0.46 0.76 16 7 N -0.95 -62.21 13.96 21.45 0.30 -61.91 16 8 Si 0.95 43.02 26.99 68.60 1.85 44.87 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.22 -8.49 6.82 99.48 0.68 -7.81 16 12 C 0.54 25.59 7.33 87.66 0.64 26.23 16 13 O -0.59 -34.27 14.97 -3.03 -0.05 -34.32 16 14 N -0.65 -21.51 3.41 -822.59 -2.80 -24.31 16 15 C 0.09 1.70 6.52 82.00 0.53 2.24 16 16 C -0.11 -1.54 7.70 30.75 0.24 -1.30 16 17 C 0.11 2.67 1.34 -0.44 0.00 2.67 16 18 C -0.17 -4.63 6.65 31.67 0.21 -4.42 16 19 C 0.05 1.21 7.73 72.74 0.56 1.78 16 20 O -0.41 -12.03 11.54 -148.98 -1.72 -13.75 16 21 C 0.05 1.29 7.11 72.06 0.51 1.80 16 22 H 0.08 2.23 6.21 -2.39 -0.01 2.21 16 23 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.11 1.56 8.02 -2.39 -0.02 1.54 16 28 H 0.11 1.40 8.06 -2.39 -0.02 1.38 16 29 H 0.13 0.79 7.89 -2.39 -0.02 0.77 16 30 H 0.05 1.81 6.56 -2.39 -0.02 1.80 16 31 H 0.11 2.33 7.91 -2.39 -0.02 2.31 16 32 H 0.10 1.49 8.14 -2.38 -0.02 1.48 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.12 1.71 7.77 -2.38 -0.02 1.69 16 35 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 Total: -1.00 -86.87 283.83 2.63 -84.24 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.05 Total: 11.08 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.00 Total: -5.91 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.50 Total: -86.21 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.76 Total: -48.07 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.85 Total: 44.87 kcal Total: -86.87 2.63 -84.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331217592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.280 kcal (2) G-P(sol) polarization free energy of solvation -86.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds