Wall clock time and date at job start Sun Mar 29 2020 22:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.52998 * 109.47146 * 180.02562 * 5 4 2 7 7 H 1.09010 * 109.47207 * 59.99644 * 6 5 4 8 8 O 1.42897 * 109.47415 * 300.00004 * 6 5 4 9 9 C 1.50702 * 109.47352 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99638 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00064 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99708 * 180.02562 * 11 9 6 13 13 Si 1.86794 * 120.00005 * 0.02562 * 11 9 6 14 14 H 1.48502 * 109.47406 * 89.99760 * 13 11 9 15 15 H 1.48499 * 109.47231 * 209.99603 * 13 11 9 16 16 H 1.48501 * 109.47195 * 329.99884 * 13 11 9 17 17 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 18 18 C 1.39869 * 125.89811 * 275.00391 * 17 2 1 19 19 C 1.35319 * 107.91930 * 179.97438 * 18 17 2 20 20 N 1.34955 * 107.74430 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.03258 * 180.02562 * 20 19 18 22 22 N 1.30842 * 125.89609 * 94.69010 * 17 2 1 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.00899 * 110.99467 * 321.04346 * 4 2 1 27 27 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 28 28 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 29 29 H 0.96699 * 113.99857 * 300.00094 * 8 6 5 30 30 H 0.97007 * 119.99778 * 180.02562 * 12 11 9 31 31 H 1.07994 * 126.04061 * 359.97059 * 18 17 2 32 32 H 1.08002 * 126.12961 * 179.97438 * 19 18 17 33 33 H 1.08999 * 109.46769 * 90.00015 * 21 20 19 34 34 H 1.08999 * 109.46597 * 209.99771 * 21 20 19 35 35 H 1.08998 * 109.47662 * 329.99688 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 1 1.9184 -1.3564 -3.8031 8 8 3.8999 -1.0495 -3.3054 9 6 2.6589 0.4057 -4.7518 10 1 2.3638 1.4381 -4.6358 11 6 3.0951 -0.0533 -5.9766 12 7 3.1512 0.7660 -7.0038 13 14 3.6062 -1.8387 -6.1769 14 1 2.4266 -2.6501 -6.5715 15 1 4.6504 -1.9398 -7.2279 16 1 4.1478 -2.3459 -4.8905 17 6 2.0324 -0.7104 1.2304 18 6 2.2126 -0.1360 2.4929 19 6 2.6755 -1.0972 3.3254 20 7 2.7849 -2.2392 2.6146 21 6 3.2490 -3.5313 3.1257 22 7 2.3698 -1.9724 1.3035 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.4496 -1.4978 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 4.5556 -0.3711 -3.0937 30 1 3.4577 0.4430 -7.8656 31 1 2.0170 0.8928 2.7567 32 1 2.9154 -0.9726 4.3710 33 1 2.3986 -4.0997 3.5023 34 1 3.7309 -4.0880 2.3220 35 1 3.9629 -3.3676 3.9330 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333100840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:08 Heat of formation + Delta-G solvation = 32.801488 kcal Electronic energy + Delta-G solvation = -16918.170809 eV Core-core repulsion = 14146.257497 eV Total energy + Delta-G solvation = -2771.913311 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04402 -37.19774 -35.37834 -32.91312 -32.15464 -30.31863 -29.86282 -27.59888 -26.56862 -24.28340 -22.46665 -21.04943 -20.43146 -19.18935 -17.19888 -16.92483 -15.48905 -15.16541 -14.84126 -14.41057 -14.33636 -13.97059 -13.66892 -13.28751 -12.98655 -12.88453 -12.58075 -12.50090 -12.26090 -11.74002 -11.38039 -11.15870 -11.07327 -10.84511 -10.41978 -10.25112 -9.83213 -9.09788 -8.95743 -8.55143 -8.47335 -8.14443 -7.74349 -6.06943 -4.17665 2.00510 2.60335 2.94312 3.45340 3.54599 3.84343 4.50703 4.55487 4.61322 4.88949 4.99007 5.03182 5.27861 5.29314 5.34445 5.39645 5.61145 5.77154 5.85265 5.95691 6.03264 6.08678 6.16870 6.23508 6.37230 6.73038 6.77991 7.07767 7.41803 7.47348 7.72251 7.93737 7.99466 8.36505 8.90374 9.21335 9.58953 11.03733 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036149 B = 0.005343 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.389470 B = 5239.189022 C = 5738.314962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.161 3.839 3 H 0.093 0.907 4 N -0.670 5.670 5 C 0.044 3.956 6 C 0.199 3.801 7 H 0.050 0.950 8 O -0.570 6.570 9 C -0.564 4.564 10 H 0.071 0.929 11 C 0.083 3.917 12 N -0.896 5.896 13 Si 0.871 3.129 14 H -0.289 1.289 15 H -0.297 1.297 16 H -0.215 1.215 17 C 0.093 3.907 18 C -0.271 4.271 19 C 0.044 3.956 20 N -0.386 5.386 21 C 0.104 3.896 22 N -0.266 5.266 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.341 0.659 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.354 0.646 30 H 0.264 0.736 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -4.327 21.501 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.300 5.300 5 C -0.085 4.085 6 C 0.141 3.859 7 H 0.068 0.932 8 O -0.375 6.375 9 C -0.602 4.602 10 H 0.089 0.911 11 C -0.121 4.121 12 N -0.533 5.533 13 Si 0.698 3.302 14 H -0.216 1.216 15 H -0.224 1.224 16 H -0.137 1.137 17 C -0.076 4.076 18 C -0.301 4.301 19 C -0.102 4.102 20 N -0.169 5.169 21 C -0.037 4.037 22 N -0.087 5.087 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.159 0.841 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.200 0.800 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.186 0.814 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.722 -6.061 20.814 21.746 hybrid contribution -0.567 0.672 0.159 0.894 sum -2.289 -5.389 20.973 21.774 Atomic orbital electron populations 1.22456 0.96330 1.02331 1.02352 1.19892 0.92132 0.96458 0.86713 0.88937 1.60432 1.56780 1.09516 1.03297 1.22702 0.99368 0.95510 0.90938 1.19688 0.82498 0.93338 0.90336 0.93250 1.86661 1.20846 1.38010 1.91992 1.21526 1.46950 0.98093 0.93593 0.91081 1.24981 0.93385 0.98423 0.95304 1.69966 1.46089 1.35958 1.01275 0.87024 0.78398 0.85102 0.79712 1.21556 1.22376 1.13713 1.22321 0.98397 0.91559 0.95280 1.21330 1.14652 1.00914 0.93209 1.22421 1.02371 0.86867 0.98509 1.48636 1.51520 1.08872 1.07829 1.21768 0.99888 0.82024 1.00057 1.77514 1.19350 1.16862 0.94965 0.92150 0.92452 0.91679 0.84098 0.95321 0.91525 0.80016 0.92670 0.83873 0.81449 0.91199 0.89281 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.14 37.16 0.34 -1.93 16 2 C 0.16 2.43 3.07 -68.86 -0.21 2.22 16 3 H 0.09 1.35 7.80 -51.93 -0.40 0.94 16 4 N -0.67 -12.11 5.94 -107.95 -0.64 -12.75 16 5 C 0.04 0.87 5.09 -3.83 -0.02 0.85 16 6 C 0.20 4.78 2.52 -27.88 -0.07 4.71 16 7 H 0.05 1.22 7.57 -51.92 -0.39 0.83 16 8 O -0.57 -13.73 10.01 -35.23 -0.35 -14.08 16 9 C -0.56 -15.90 9.34 -34.44 -0.32 -16.23 16 10 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 11 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 12 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 13 Si 0.87 22.47 26.99 -169.99 -4.59 17.88 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 16 H -0.21 -5.50 5.30 56.52 0.30 -5.20 16 17 C 0.09 1.42 6.19 -82.41 -0.51 0.91 16 18 C -0.27 -3.43 10.74 -40.01 -0.43 -3.86 16 19 C 0.04 0.48 11.49 -17.22 -0.20 0.28 16 20 N -0.39 -4.91 4.01 -68.16 -0.27 -5.19 16 21 C 0.10 0.85 11.47 59.85 0.69 1.53 16 22 N -0.27 -4.37 12.35 33.67 0.42 -3.96 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 25 H 0.06 0.85 7.45 -51.93 -0.39 0.46 16 26 H 0.34 6.22 8.47 -39.29 -0.33 5.89 16 27 H 0.03 0.56 7.44 -51.93 -0.39 0.17 16 28 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 29 H 0.35 7.77 9.04 45.56 0.41 8.18 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -34.48 296.22 -5.56 -40.04 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.53 Total: 9.75 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.83 Total: -9.16 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.27 Total: -48.88 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.35 Total: -14.08 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.59 Total: 17.88 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.48 -5.56 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333100840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.840 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds