Wall clock time and date at job start Sun Mar 29 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.52998 * 109.47146 * 180.02562 * 5 4 2 7 7 H 1.09010 * 109.47207 * 59.99644 * 6 5 4 8 8 O 1.42897 * 109.47415 * 300.00004 * 6 5 4 9 9 C 1.50702 * 109.47352 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99638 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00064 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99708 * 180.02562 * 11 9 6 13 13 Si 1.86794 * 120.00005 * 0.02562 * 11 9 6 14 14 H 1.48502 * 109.47406 * 89.99760 * 13 11 9 15 15 H 1.48499 * 109.47231 * 209.99603 * 13 11 9 16 16 H 1.48501 * 109.47195 * 329.99884 * 13 11 9 17 17 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 18 18 C 1.39869 * 125.89811 * 275.00391 * 17 2 1 19 19 C 1.35319 * 107.91930 * 179.97438 * 18 17 2 20 20 N 1.34955 * 107.74430 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.03258 * 180.02562 * 20 19 18 22 22 N 1.30842 * 125.89609 * 94.69010 * 17 2 1 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.00899 * 110.99467 * 321.04346 * 4 2 1 27 27 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 28 28 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 29 29 H 0.96699 * 113.99857 * 300.00094 * 8 6 5 30 30 H 0.97007 * 119.99778 * 180.02562 * 12 11 9 31 31 H 1.07994 * 126.04061 * 359.97059 * 18 17 2 32 32 H 1.08002 * 126.12961 * 179.97438 * 19 18 17 33 33 H 1.08999 * 109.46769 * 90.00015 * 21 20 19 34 34 H 1.08999 * 109.46597 * 209.99771 * 21 20 19 35 35 H 1.08998 * 109.47662 * 329.99688 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 1 1.9184 -1.3564 -3.8031 8 8 3.8999 -1.0495 -3.3054 9 6 2.6589 0.4057 -4.7518 10 1 2.3638 1.4381 -4.6358 11 6 3.0951 -0.0533 -5.9766 12 7 3.1512 0.7660 -7.0038 13 14 3.6062 -1.8387 -6.1769 14 1 2.4266 -2.6501 -6.5715 15 1 4.6504 -1.9398 -7.2279 16 1 4.1478 -2.3459 -4.8905 17 6 2.0324 -0.7104 1.2304 18 6 2.2126 -0.1360 2.4929 19 6 2.6755 -1.0972 3.3254 20 7 2.7849 -2.2392 2.6146 21 6 3.2490 -3.5313 3.1257 22 7 2.3698 -1.9724 1.3035 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.4496 -1.4978 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 4.5556 -0.3711 -3.0937 30 1 3.4577 0.4430 -7.8656 31 1 2.0170 0.8928 2.7567 32 1 2.9154 -0.9726 4.3710 33 1 2.3986 -4.0997 3.5023 34 1 3.7309 -4.0880 2.3220 35 1 3.9629 -3.3676 3.9330 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333100840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:07 Heat of formation + Delta-G solvation = 4.955632 kcal Electronic energy + Delta-G solvation = -16919.378296 eV Core-core repulsion = 14146.257497 eV Total energy + Delta-G solvation = -2773.120798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98241 -38.77883 -36.97391 -34.39567 -33.92608 -31.67353 -30.83098 -29.40180 -27.40124 -26.01657 -23.65655 -22.46223 -21.76370 -20.28669 -19.29508 -17.86819 -16.90861 -16.68563 -16.24377 -16.13619 -15.72691 -15.38911 -14.78418 -14.72271 -14.45694 -14.11114 -13.76308 -13.59649 -13.23950 -13.20819 -12.92213 -12.78717 -12.72141 -12.40007 -12.14196 -11.76115 -11.36353 -11.06773 -10.79457 -10.13042 -10.05887 -9.38853 -9.16331 -8.34602 -6.48508 1.11125 1.39782 1.45203 1.77415 1.81913 1.94872 2.45570 3.03991 3.25351 3.69552 4.01975 4.12271 4.19345 4.25428 4.31094 4.42625 4.48361 4.59114 4.69996 4.73953 4.86207 4.89017 5.00092 5.04857 5.17403 5.22001 5.47949 5.52863 5.78973 6.10560 6.18285 6.31439 6.48984 6.65315 6.97124 7.24147 7.39230 8.79549 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036149 B = 0.005343 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.389470 B = 5239.189022 C = 5738.314962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.160 3.840 3 H 0.096 0.904 4 N -0.676 5.676 5 C 0.061 3.939 6 C 0.205 3.795 7 H 0.046 0.954 8 O -0.575 6.575 9 C -0.564 4.564 10 H 0.040 0.960 11 C 0.030 3.970 12 N -0.939 5.939 13 Si 0.938 3.062 14 H -0.285 1.285 15 H -0.297 1.297 16 H -0.210 1.210 17 C 0.074 3.926 18 C -0.291 4.291 19 C 0.058 3.942 20 N -0.391 5.391 21 C 0.096 3.904 22 N -0.318 5.318 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.338 0.662 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.364 0.636 30 H 0.267 0.733 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 -5.293 24.080 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.113 0.887 4 N -0.306 5.306 5 C -0.069 4.069 6 C 0.147 3.853 7 H 0.063 0.937 8 O -0.381 6.381 9 C -0.602 4.602 10 H 0.058 0.942 11 C -0.169 4.169 12 N -0.579 5.579 13 Si 0.763 3.237 14 H -0.212 1.212 15 H -0.224 1.224 16 H -0.132 1.132 17 C -0.093 4.093 18 C -0.321 4.321 19 C -0.088 4.088 20 N -0.174 5.174 21 C -0.045 4.045 22 N -0.141 5.141 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.156 0.844 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.211 0.789 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.231 0.769 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.502 -7.028 23.413 24.491 hybrid contribution -0.624 1.001 -0.529 1.293 sum -2.126 -6.027 22.885 23.760 Atomic orbital electron populations 1.22345 0.94812 1.02154 1.03151 1.19950 0.93383 0.96292 0.85559 0.88652 1.60350 1.57612 1.09269 1.03345 1.22339 0.99134 0.95091 0.90307 1.19526 0.82671 0.92547 0.90582 0.93667 1.86600 1.21029 1.38464 1.91971 1.21842 1.45725 0.97481 0.95176 0.94194 1.25803 0.93678 1.02318 0.95141 1.70079 1.47883 1.37934 1.01980 0.85989 0.77935 0.80245 0.79548 1.21180 1.22361 1.13227 1.22396 0.99036 0.91795 0.96080 1.21649 1.15610 1.02365 0.92473 1.23133 1.00017 0.85573 1.00079 1.48982 1.50821 1.10625 1.06936 1.22103 1.01229 0.80574 1.00553 1.77397 1.21337 1.17690 0.97698 0.90157 0.93070 0.91979 0.84398 0.95140 0.91708 0.78915 0.92459 0.82064 0.76916 0.89710 0.90391 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.14 71.98 0.66 -3.45 16 2 C 0.16 4.70 3.07 44.17 0.14 4.83 16 3 H 0.10 2.69 7.80 -2.39 -0.02 2.67 16 4 N -0.68 -24.06 5.94 -495.45 -2.94 -27.00 16 5 C 0.06 2.40 5.09 86.30 0.44 2.84 16 6 C 0.21 9.76 2.52 29.85 0.08 9.83 16 7 H 0.05 2.21 7.57 -2.38 -0.02 2.19 16 8 O -0.57 -27.04 10.01 -148.98 -1.49 -28.53 16 9 C -0.56 -32.20 9.34 25.60 0.24 -31.96 16 10 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 11 C 0.03 1.78 5.47 84.65 0.46 2.25 16 12 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 13 Si 0.94 46.73 26.99 68.60 1.85 48.58 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 16 H -0.21 -10.23 5.30 99.48 0.53 -9.70 16 17 C 0.07 2.18 6.19 43.10 0.27 2.44 16 18 C -0.29 -6.69 10.74 21.99 0.24 -6.45 16 19 C 0.06 1.08 11.49 83.54 0.96 2.04 16 20 N -0.39 -9.06 4.01 -369.55 -1.48 -10.54 16 21 C 0.10 1.30 11.47 127.77 1.47 2.77 16 22 N -0.32 -10.18 12.35 -47.38 -0.59 -10.77 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 25 H 0.06 1.56 7.45 -2.38 -0.02 1.54 16 26 H 0.34 12.26 8.47 -89.69 -0.76 11.50 16 27 H 0.03 1.19 7.44 -2.38 -0.02 1.17 16 28 H 0.06 2.58 8.06 -2.39 -0.02 2.56 16 29 H 0.36 15.61 9.04 -74.06 -0.67 14.95 16 30 H 0.27 15.79 8.31 -92.70 -0.77 15.01 16 31 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -74.47 296.22 0.07 -74.40 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.52 Total: 27.57 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.94 Total: -14.85 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -4.71 Total: -107.17 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.49 Total: -28.53 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.85 Total: 48.58 kcal Total: -74.47 0.07 -74.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333100840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.353 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds