Wall clock time and date at job start Sun Mar 29 2020 22:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1 14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 H 1.08996 * 115.56059 * 350.58484 * 15 14 12 17 17 C 1.53126 * 117.50801 * 136.32075 * 15 14 12 18 18 C 1.52463 * 117.51269 * 204.84487 * 15 14 12 19 19 C 1.53256 * 128.58310 * 134.95114 * 18 15 14 20 20 C 1.53892 * 86.88427 * 194.89032 * 19 18 15 21 21 O 1.42901 * 113.66279 * 270.38482 * 20 19 18 22 22 C 1.53253 * 128.58446 * 10.15783 * 18 15 14 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 28 28 H 1.09000 * 117.51118 * 214.89945 * 17 15 14 29 29 H 1.08994 * 117.51565 * 359.97438 * 17 15 14 30 30 H 1.09002 * 113.64875 * 309.39207 * 19 18 15 31 31 H 1.09000 * 113.64453 * 80.39379 * 19 18 15 32 32 H 1.08998 * 113.58542 * 139.57052 * 20 19 18 33 33 H 0.96700 * 113.99885 * 277.70043 * 21 20 19 34 34 H 1.08998 * 113.64798 * 279.60863 * 22 18 15 35 35 H 1.09001 * 113.64736 * 50.61161 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9409 3.6507 16 1 2.6770 -1.9024 3.4745 17 6 2.7334 -0.0784 4.7954 18 6 1.3870 -0.7828 4.9341 19 6 0.9716 -1.8610 5.9409 20 6 -0.0246 -0.8321 6.5043 21 8 0.5202 -0.0155 7.5428 22 6 -0.0022 -0.1627 5.1188 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7011 1.1560 -3.4844 27 1 1.1488 0.5384 2.5435 28 1 3.5697 -0.4728 5.3725 29 1 2.7251 1.0029 4.6582 30 1 0.4936 -2.7266 5.4822 31 1 1.7616 -2.1332 6.6408 32 1 -0.9921 -1.2601 6.7664 33 1 0.5092 -0.4305 8.4161 34 1 0.0071 0.9265 5.1596 35 1 -0.7513 -0.5556 4.4313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333555771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:03 Heat of formation + Delta-G solvation = -42.110136 kcal Electronic energy + Delta-G solvation = -17011.728656 eV Core-core repulsion = 14204.274181 eV Total energy + Delta-G solvation = -2807.454474 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03025 -38.47101 -36.14383 -33.71835 -33.48608 -31.39918 -29.92534 -25.92318 -25.11873 -23.21410 -22.65634 -21.15321 -19.41731 -18.75639 -17.33764 -16.37444 -16.09600 -15.59367 -15.03719 -14.58600 -14.21149 -13.98878 -13.47807 -13.23715 -12.93332 -12.50917 -12.46529 -11.83647 -11.64678 -11.36215 -11.01074 -10.94787 -10.69939 -10.65299 -10.41264 -10.21255 -9.98391 -9.94906 -9.77216 -8.94583 -8.60640 -8.31184 -8.10504 -6.01578 -4.04480 3.33650 3.41056 3.49168 3.54329 3.72765 3.89725 4.10297 4.45024 4.49304 4.65272 4.66690 4.91580 5.07713 5.27373 5.31962 5.60572 5.64620 5.72235 5.83971 5.91682 6.00608 6.05933 6.19956 6.41616 6.63422 6.84274 6.93860 7.14625 7.45208 7.49484 7.77376 8.01241 8.16997 8.47241 9.05093 9.25591 9.61110 11.06113 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054034 B = 0.004848 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.071003 B = 5774.490476 C = 6004.495857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.715 5.715 15 C 0.106 3.894 16 H 0.131 0.869 17 C -0.159 4.159 18 C -0.167 4.167 19 C -0.128 4.128 20 C 0.083 3.917 21 O -0.549 6.549 22 C -0.093 4.093 23 H 0.093 0.907 24 H 0.031 0.969 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.397 0.603 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.377 0.623 34 H 0.076 0.924 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 -1.209 17.533 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.313 3.687 13 O -0.421 6.421 14 N -0.366 5.366 15 C -0.001 4.001 16 H 0.149 0.851 17 C -0.198 4.198 18 C -0.169 4.169 19 C -0.166 4.166 20 C 0.024 3.976 21 O -0.353 6.353 22 C -0.131 4.131 23 H 0.112 0.888 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.231 0.769 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.224 0.776 34 H 0.095 0.905 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.650 -1.414 16.748 17.015 hybrid contribution -0.048 -0.355 -0.236 0.429 sum -2.697 -1.769 16.512 16.824 Atomic orbital electron populations 1.21740 0.96506 0.99814 1.00935 1.18890 0.94177 0.96881 0.89285 0.92949 1.21194 1.30768 1.12844 0.88964 0.90710 1.24956 0.95127 0.95096 0.99128 1.69884 1.37182 1.23193 1.23404 0.86398 0.78589 0.79810 0.82466 1.19558 1.21068 1.21051 1.22022 0.78214 0.84190 0.84273 1.90518 1.37947 1.26959 1.86654 1.45715 1.54430 1.31862 1.04627 1.21460 0.99896 0.98055 0.80715 0.85097 1.23307 0.94790 0.99407 1.02276 1.22615 0.93340 1.00856 1.00070 1.23159 0.99458 0.96535 0.97458 1.22597 0.94751 0.91970 0.88313 1.86499 1.85217 1.44418 1.19206 1.22522 0.95305 1.01017 0.94215 0.88807 0.94994 0.96945 0.93041 0.76930 0.88452 0.88546 0.88966 0.90949 0.91474 0.77621 0.90546 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.86 37.16 0.33 -2.72 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.31 8.38 -34.44 -0.29 -14.60 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.33 11.31 55.43 0.63 -24.71 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.52 12.14 7.15 -10.99 -0.08 12.06 16 13 O -0.55 -14.45 15.03 5.56 0.08 -14.37 16 14 N -0.72 -12.91 5.44 -54.01 -0.29 -13.21 16 15 C 0.11 1.67 6.43 -68.14 -0.44 1.24 16 16 H 0.13 2.28 7.40 -51.93 -0.38 1.90 16 17 C -0.16 -2.11 10.46 -26.88 -0.28 -2.39 16 18 C -0.17 -2.11 2.96 -154.73 -0.46 -2.57 16 19 C -0.13 -1.32 7.93 -26.13 -0.21 -1.53 16 20 C 0.08 0.80 5.27 -25.80 -0.14 0.66 16 21 O -0.55 -5.44 13.60 -35.23 -0.48 -5.92 16 22 C -0.09 -1.06 7.91 -26.14 -0.21 -1.27 16 23 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 27 H 0.40 6.35 8.24 -40.82 -0.34 6.01 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.38 1.97 9.12 45.56 0.42 2.38 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -32.43 296.25 -7.03 -39.46 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.31 Total: 6.47 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.10 Total: -9.12 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.33 Total: -37.92 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.40 Total: -20.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.43 -7.03 -39.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333555771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.648 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds