Wall clock time and date at job start Sun Mar 29 2020 22:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1 14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 H 1.08996 * 115.56059 * 350.58484 * 15 14 12 17 17 C 1.53126 * 117.50801 * 136.32075 * 15 14 12 18 18 C 1.52463 * 117.51269 * 204.84487 * 15 14 12 19 19 C 1.53256 * 128.58310 * 134.95114 * 18 15 14 20 20 C 1.53892 * 86.88427 * 194.89032 * 19 18 15 21 21 O 1.42901 * 113.66279 * 270.38482 * 20 19 18 22 22 C 1.53253 * 128.58446 * 10.15783 * 18 15 14 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 28 28 H 1.09000 * 117.51118 * 214.89945 * 17 15 14 29 29 H 1.08994 * 117.51565 * 359.97438 * 17 15 14 30 30 H 1.09002 * 113.64875 * 309.39207 * 19 18 15 31 31 H 1.09000 * 113.64453 * 80.39379 * 19 18 15 32 32 H 1.08998 * 113.58542 * 139.57052 * 20 19 18 33 33 H 0.96700 * 113.99885 * 277.70043 * 21 20 19 34 34 H 1.08998 * 113.64798 * 279.60863 * 22 18 15 35 35 H 1.09001 * 113.64736 * 50.61161 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9409 3.6507 16 1 2.6770 -1.9024 3.4745 17 6 2.7334 -0.0784 4.7954 18 6 1.3870 -0.7828 4.9341 19 6 0.9716 -1.8610 5.9409 20 6 -0.0246 -0.8321 6.5043 21 8 0.5202 -0.0155 7.5428 22 6 -0.0022 -0.1627 5.1188 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7011 1.1560 -3.4844 27 1 1.1488 0.5384 2.5435 28 1 3.5697 -0.4728 5.3725 29 1 2.7251 1.0029 4.6582 30 1 0.4936 -2.7266 5.4822 31 1 1.7616 -2.1332 6.6408 32 1 -0.9921 -1.2601 6.7664 33 1 0.5092 -0.4305 8.4161 34 1 0.0071 0.9265 5.1596 35 1 -0.7513 -0.5556 4.4313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333555771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:03 Heat of formation + Delta-G solvation = -66.238056 kcal Electronic energy + Delta-G solvation = -17012.774921 eV Core-core repulsion = 14204.274181 eV Total energy + Delta-G solvation = -2808.500739 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16169 -40.03656 -37.17285 -35.77668 -34.72293 -32.96659 -31.65612 -27.21037 -26.76747 -24.97185 -23.50786 -22.57172 -21.17019 -19.66942 -18.44425 -18.20937 -17.54618 -17.20017 -16.49000 -15.96040 -15.74306 -15.30097 -15.00333 -14.48028 -14.19745 -14.07289 -13.59129 -13.47660 -12.97861 -12.81133 -12.71784 -12.59531 -12.51249 -12.19602 -12.03433 -11.85669 -11.34474 -11.05069 -10.89190 -10.77775 -10.60636 -10.31408 -9.49357 -8.15659 -6.26143 1.39514 1.41326 1.55054 1.84064 2.25398 2.48015 2.85915 3.13880 3.27060 3.53615 3.70406 3.74968 3.82837 4.13347 4.24582 4.50488 4.69424 4.74211 4.79433 4.83294 4.88399 4.92937 4.97417 5.03614 5.09729 5.20780 5.32516 5.48632 5.64435 5.74862 5.94221 6.20505 6.72310 6.85355 6.97341 7.39133 7.52787 8.90412 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054034 B = 0.004848 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.071003 B = 5774.490476 C = 6004.495857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.957 3.043 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.588 6.588 14 N -0.694 5.694 15 C 0.069 3.931 16 H 0.109 0.891 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.126 4.126 20 C 0.095 3.905 21 O -0.567 6.567 22 C -0.101 4.101 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.051 0.949 26 H 0.265 0.735 27 H 0.408 0.592 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.398 0.602 34 H 0.072 0.928 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -1.002 19.102 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.059 0.941 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.782 3.218 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.314 3.686 13 O -0.467 6.467 14 N -0.344 5.344 15 C -0.037 4.037 16 H 0.127 0.873 17 C -0.186 4.186 18 C -0.156 4.156 19 C -0.163 4.163 20 C 0.036 3.964 21 O -0.375 6.375 22 C -0.139 4.139 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.244 0.756 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.604 -1.175 18.380 18.767 hybrid contribution 0.246 -0.378 -0.632 0.777 sum -3.358 -1.553 17.747 18.129 Atomic orbital electron populations 1.21546 0.94861 0.99479 1.01732 1.18826 0.95498 0.95890 0.89520 0.94140 1.21314 1.31521 1.12788 0.91114 0.93392 1.25607 0.95148 0.95774 1.01443 1.69957 1.37182 1.23624 1.24281 0.85523 0.78360 0.78568 0.79308 1.20493 1.19810 1.19934 1.21587 0.78008 0.83631 0.85387 1.90491 1.40027 1.28792 1.87413 1.45348 1.53401 1.31717 1.03977 1.21533 1.03372 0.97970 0.80822 0.87290 1.23338 0.96006 0.99237 1.00017 1.22849 0.93751 1.01786 0.97193 1.23246 1.00011 0.96352 0.96737 1.22498 0.95579 0.90860 0.87483 1.86447 1.85317 1.45182 1.20551 1.22655 0.94255 1.00970 0.95974 0.90984 0.95754 0.93032 0.92569 0.75565 0.87113 0.88244 0.88363 0.89996 0.88859 0.75209 0.90885 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.86 71.98 0.64 -4.80 16 2 C 0.02 1.23 2.64 -12.29 -0.03 1.19 16 3 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 4 C -0.53 -31.20 8.38 25.60 0.21 -30.98 16 5 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.54 11.31 21.45 0.24 -51.29 16 8 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 9 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.52 24.90 7.15 87.66 0.63 25.52 16 13 O -0.59 -32.39 15.03 -3.02 -0.05 -32.43 16 14 N -0.69 -24.93 5.44 -443.18 -2.41 -27.34 16 15 C 0.07 2.16 6.43 44.85 0.29 2.45 16 16 H 0.11 3.91 7.40 -2.39 -0.02 3.89 16 17 C -0.15 -3.68 10.46 30.50 0.32 -3.36 16 18 C -0.15 -3.60 2.96 -52.33 -0.15 -3.75 16 19 C -0.13 -2.23 7.93 30.98 0.25 -1.99 16 20 C 0.09 1.50 5.27 31.19 0.16 1.66 16 21 O -0.57 -9.27 13.60 -148.98 -2.03 -11.29 16 22 C -0.10 -2.04 7.91 30.98 0.24 -1.79 16 23 H 0.07 3.65 6.06 -2.39 -0.01 3.64 16 24 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.90 7.56 -2.39 -0.02 1.89 16 26 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 27 H 0.41 12.62 8.24 -92.71 -0.76 11.86 16 28 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.40 2.71 9.12 -74.06 -0.68 2.04 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -70.76 296.25 0.45 -70.31 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.33 Total: 18.95 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 3.00 Total: -14.30 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -2.17 Total: -78.64 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.07 Total: -43.73 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.76 0.45 -70.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333555771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.070 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds