Wall clock time and date at job start Sun Mar 29 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 C 1.50703 * 109.46720 * 239.99572 * 2 1 3 5 5 H 1.08003 * 119.99799 * 245.46286 * 4 2 1 6 6 C 1.37878 * 119.99669 * 65.47151 * 4 2 1 7 7 N 1.31506 * 120.00509 * 9.64581 * 6 4 2 8 8 Si 1.86805 * 119.99591 * 189.64682 * 6 4 2 9 9 H 1.48504 * 109.46926 * 84.99383 * 8 6 4 10 10 H 1.48500 * 109.46853 * 204.99085 * 8 6 4 11 11 H 1.48498 * 109.47124 * 324.99563 * 8 6 4 12 12 C 1.50703 * 109.47072 * 120.00133 * 2 1 3 13 13 O 1.21283 * 120.00096 * 120.00093 * 12 2 1 14 14 N 1.34781 * 119.99591 * 299.99353 * 12 2 1 15 15 C 1.46501 * 119.99657 * 180.02562 * 14 12 2 16 16 H 1.08997 * 115.55970 * 9.26973 * 15 14 12 17 17 C 1.53124 * 117.51481 * 223.46397 * 15 14 12 18 18 C 1.52458 * 117.51186 * 155.00168 * 15 14 12 19 19 C 1.53261 * 128.58659 * 225.04869 * 18 15 14 20 20 C 1.53886 * 86.88169 * 114.94465 * 19 18 15 21 21 O 1.42897 * 113.58690 * 139.57778 * 20 19 18 22 22 C 1.53421 * 128.52276 * 349.80409 * 18 15 14 23 23 H 1.09002 * 109.46953 * 183.70031 * 1 2 3 24 24 H 1.09002 * 109.46806 * 303.69587 * 1 2 3 25 25 H 1.08997 * 109.47128 * 63.69378 * 1 2 3 26 26 H 0.96996 * 120.00052 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00553 * 0.02562 * 14 12 2 28 28 H 1.08991 * 117.51615 * 145.10271 * 17 15 14 29 29 H 1.09005 * 117.51078 * 0.02562 * 17 15 14 30 30 H 1.08998 * 113.64334 * 0.44953 * 19 18 15 31 31 H 1.08995 * 113.64652 * 229.44564 * 19 18 15 32 32 H 1.09003 * 113.58680 * 270.31162 * 20 19 18 33 33 H 0.96704 * 114.00117 * 181.45019 * 21 20 19 34 34 H 1.08995 * 113.64941 * 130.54079 * 22 18 15 35 35 H 1.09004 * 113.69291 * 359.49335 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5784 -1.6372 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.3012 1.0362 -2.5936 8 14 2.1735 -1.1792 -4.0101 9 1 1.0199 -2.0604 -4.3231 10 1 2.4210 -0.2632 -5.1525 11 1 3.3808 -2.0102 -3.7714 12 6 2.0323 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6508 16 1 2.9393 -1.7172 3.4744 17 6 1.2042 -1.1560 4.7976 18 6 2.3192 -0.1250 4.9332 19 6 3.4755 -0.0943 5.9386 20 6 3.6845 1.3733 5.5257 21 8 3.9863 2.2384 6.6224 22 6 2.2016 1.3938 5.1151 23 1 -0.3633 -1.0255 0.0663 24 1 -0.3633 0.5702 0.8550 25 1 -0.3633 0.4554 -0.9212 26 1 1.1337 1.4111 -3.4724 27 1 1.1489 0.5386 2.5436 28 1 1.2956 -2.0754 5.3758 29 1 0.1884 -0.7847 4.6617 30 1 4.3062 -0.7467 5.6695 31 1 3.1578 -0.2162 6.9741 32 1 4.3709 1.4972 4.6881 33 1 4.0970 3.1660 6.3727 34 1 1.5288 1.6869 5.9210 35 1 2.0125 1.9328 4.1867 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333555778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:05 Heat of formation + Delta-G solvation = -46.877205 kcal Electronic energy + Delta-G solvation = -16995.128303 eV Core-core repulsion = 14187.467113 eV Total energy + Delta-G solvation = -2807.661190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04035 -38.47480 -36.27261 -33.71738 -33.52948 -31.45011 -30.07322 -25.92890 -25.12403 -23.38966 -22.31993 -21.42558 -19.50096 -18.53632 -17.59000 -16.40429 -16.15267 -15.62080 -15.12384 -14.55396 -14.33015 -14.04869 -13.37600 -13.12397 -12.83947 -12.50509 -12.45423 -12.17615 -11.71789 -11.28561 -11.10399 -10.99014 -10.84671 -10.66730 -10.58389 -10.30123 -10.11503 -9.96129 -9.63076 -9.05317 -8.57814 -8.38647 -8.25899 -6.07596 -4.06247 3.34028 3.39415 3.43620 3.45379 3.64152 3.88480 4.26339 4.44029 4.47141 4.58224 4.69846 4.79707 5.08238 5.17703 5.28185 5.63076 5.64158 5.65756 5.76181 5.83014 5.98839 6.10025 6.16311 6.32341 6.51620 6.75357 6.83128 7.05005 7.40698 7.49834 7.62039 7.95524 8.06358 8.41277 9.02688 9.18566 9.58030 11.03031 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.005025 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.541199 B = 5570.416496 C = 5692.969637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.028 3.972 3 H 0.059 0.941 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.542 6.542 14 N -0.717 5.717 15 C 0.124 3.876 16 H 0.135 0.865 17 C -0.175 4.175 18 C -0.179 4.179 19 C -0.084 4.084 20 C 0.080 3.920 21 O -0.564 6.564 22 C -0.127 4.127 23 H 0.033 0.967 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.261 0.739 27 H 0.397 0.603 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.377 0.623 34 H 0.090 0.910 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 2.473 15.166 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 H 0.077 0.923 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.418 6.418 14 N -0.368 5.368 15 C 0.017 3.983 16 H 0.153 0.847 17 C -0.214 4.214 18 C -0.180 4.180 19 C -0.121 4.121 20 C 0.021 3.979 21 O -0.369 6.369 22 C -0.165 4.165 23 H 0.053 0.947 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.231 0.769 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.224 0.776 34 H 0.109 0.891 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.513 1.314 15.208 15.274 hybrid contribution -0.224 0.487 -1.063 1.191 sum 0.289 1.801 14.145 14.262 Atomic orbital electron populations 1.21682 0.96894 0.99216 1.00645 1.18891 0.93702 0.97401 0.89279 0.92285 1.21089 1.35351 1.08720 0.89048 0.90759 1.24942 0.95257 0.94708 0.99121 1.69952 1.45511 1.13972 1.23928 0.86517 0.78943 0.80020 0.82060 1.20535 1.21386 1.19763 1.22042 0.78249 0.84158 0.84177 1.90529 1.37833 1.26809 1.86599 1.45766 1.54469 1.31960 1.04623 1.21396 0.99494 0.97133 0.80301 0.84749 1.23346 0.95393 0.99802 1.02835 1.22490 1.00131 0.94372 1.01053 1.22519 0.96528 0.94386 0.98692 1.23232 0.94659 0.90871 0.89093 1.86488 1.93536 1.21886 1.35007 1.23153 0.97909 0.93589 1.01830 0.94735 0.96474 0.90539 0.92924 0.76899 0.88195 0.88456 0.90689 0.88995 0.89745 0.77561 0.89140 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.94 37.16 0.33 -2.48 16 2 C 0.03 0.70 2.50 -92.92 -0.23 0.47 16 3 H 0.06 1.52 8.09 -51.93 -0.42 1.10 16 4 C -0.50 -14.22 8.28 -34.44 -0.29 -14.51 16 5 H 0.07 2.22 6.79 -52.48 -0.36 1.86 16 6 C 0.06 1.69 5.17 -17.82 -0.09 1.60 16 7 N -0.89 -25.16 12.17 55.43 0.67 -24.48 16 8 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 11.80 7.15 -10.98 -0.08 11.72 16 13 O -0.54 -14.03 15.03 5.56 0.08 -13.95 16 14 N -0.72 -12.36 5.45 -54.01 -0.29 -12.65 16 15 C 0.12 1.86 6.43 -68.14 -0.44 1.42 16 16 H 0.13 2.23 7.40 -51.93 -0.38 1.84 16 17 C -0.17 -2.11 10.46 -26.94 -0.28 -2.39 16 18 C -0.18 -2.15 3.02 -154.71 -0.47 -2.61 16 19 C -0.08 -0.93 7.93 -26.13 -0.21 -1.14 16 20 C 0.08 0.88 5.20 -25.81 -0.13 0.74 16 21 O -0.56 -5.91 13.67 -35.23 -0.48 -6.39 16 22 C -0.13 -1.38 7.92 -26.05 -0.21 -1.59 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.31 7.67 -51.93 -0.40 -0.09 16 25 H 0.08 1.87 6.83 -51.93 -0.35 1.51 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.40 6.00 8.01 -40.82 -0.33 5.67 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.38 2.38 9.12 45.56 0.42 2.79 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -31.66 297.26 -6.98 -38.64 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.33 Total: 6.43 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.09 Total: -8.77 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.38 Total: -37.13 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.40 Total: -20.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.66 -6.98 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333555778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.236 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds