Wall clock time and date at job start Sun Mar 29 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 C 1.50703 * 109.46720 * 239.99572 * 2 1 3 5 5 H 1.08003 * 119.99799 * 245.46286 * 4 2 1 6 6 C 1.37878 * 119.99669 * 65.47151 * 4 2 1 7 7 N 1.31506 * 120.00509 * 9.64581 * 6 4 2 8 8 Si 1.86805 * 119.99591 * 189.64682 * 6 4 2 9 9 H 1.48504 * 109.46926 * 84.99383 * 8 6 4 10 10 H 1.48500 * 109.46853 * 204.99085 * 8 6 4 11 11 H 1.48498 * 109.47124 * 324.99563 * 8 6 4 12 12 C 1.50703 * 109.47072 * 120.00133 * 2 1 3 13 13 O 1.21283 * 120.00096 * 120.00093 * 12 2 1 14 14 N 1.34781 * 119.99591 * 299.99353 * 12 2 1 15 15 C 1.46501 * 119.99657 * 180.02562 * 14 12 2 16 16 H 1.08997 * 115.55970 * 9.26973 * 15 14 12 17 17 C 1.53124 * 117.51481 * 223.46397 * 15 14 12 18 18 C 1.52458 * 117.51186 * 155.00168 * 15 14 12 19 19 C 1.53261 * 128.58659 * 225.04869 * 18 15 14 20 20 C 1.53886 * 86.88169 * 114.94465 * 19 18 15 21 21 O 1.42897 * 113.58690 * 139.57778 * 20 19 18 22 22 C 1.53421 * 128.52276 * 349.80409 * 18 15 14 23 23 H 1.09002 * 109.46953 * 183.70031 * 1 2 3 24 24 H 1.09002 * 109.46806 * 303.69587 * 1 2 3 25 25 H 1.08997 * 109.47128 * 63.69378 * 1 2 3 26 26 H 0.96996 * 120.00052 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00553 * 0.02562 * 14 12 2 28 28 H 1.08991 * 117.51615 * 145.10271 * 17 15 14 29 29 H 1.09005 * 117.51078 * 0.02562 * 17 15 14 30 30 H 1.08998 * 113.64334 * 0.44953 * 19 18 15 31 31 H 1.08995 * 113.64652 * 229.44564 * 19 18 15 32 32 H 1.09003 * 113.58680 * 270.31162 * 20 19 18 33 33 H 0.96704 * 114.00117 * 181.45019 * 21 20 19 34 34 H 1.08995 * 113.64941 * 130.54079 * 22 18 15 35 35 H 1.09004 * 113.69291 * 359.49335 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5784 -1.6372 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.3012 1.0362 -2.5936 8 14 2.1735 -1.1792 -4.0101 9 1 1.0199 -2.0604 -4.3231 10 1 2.4210 -0.2632 -5.1525 11 1 3.3808 -2.0102 -3.7714 12 6 2.0323 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6508 16 1 2.9393 -1.7172 3.4744 17 6 1.2042 -1.1560 4.7976 18 6 2.3192 -0.1250 4.9332 19 6 3.4755 -0.0943 5.9386 20 6 3.6845 1.3733 5.5257 21 8 3.9863 2.2384 6.6224 22 6 2.2016 1.3938 5.1151 23 1 -0.3633 -1.0255 0.0663 24 1 -0.3633 0.5702 0.8550 25 1 -0.3633 0.4554 -0.9212 26 1 1.1337 1.4111 -3.4724 27 1 1.1489 0.5386 2.5436 28 1 1.2956 -2.0754 5.3758 29 1 0.1884 -0.7847 4.6617 30 1 4.3062 -0.7467 5.6695 31 1 3.1578 -0.2162 6.9741 32 1 4.3709 1.4972 4.6881 33 1 4.0970 3.1660 6.3727 34 1 1.5288 1.6869 5.9210 35 1 2.0125 1.9328 4.1867 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333555778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:05 Heat of formation + Delta-G solvation = -70.204443 kcal Electronic energy + Delta-G solvation = -16996.139848 eV Core-core repulsion = 14187.467113 eV Total energy + Delta-G solvation = -2808.672735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18826 -39.99844 -37.29037 -35.73418 -34.79360 -32.99842 -31.72810 -27.17177 -26.80410 -25.05630 -23.23523 -22.77710 -21.18437 -19.60002 -18.41770 -18.34856 -17.70912 -17.16275 -16.49525 -16.03842 -15.73576 -15.40180 -14.93231 -14.51186 -14.19600 -13.86162 -13.57621 -13.32171 -13.27265 -12.94811 -12.81378 -12.58281 -12.35933 -12.17022 -12.11594 -12.00013 -11.52474 -11.10115 -11.00937 -10.61949 -10.52082 -10.33803 -9.62977 -8.19819 -6.24953 1.40948 1.41712 1.52509 1.82562 2.21892 2.47234 2.80300 3.13051 3.38322 3.46928 3.64863 3.73976 3.79998 4.14024 4.21979 4.27285 4.67542 4.71589 4.80025 4.80479 4.86315 4.89875 4.93254 5.01470 5.07935 5.24774 5.27667 5.46515 5.62750 5.71853 5.84375 6.16390 6.71752 6.85893 6.88700 7.38785 7.52094 8.89720 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.005025 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.541199 B = 5570.416496 C = 5692.969637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.024 3.976 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.526 3.474 13 O -0.586 6.586 14 N -0.695 5.695 15 C 0.086 3.914 16 H 0.112 0.888 17 C -0.153 4.153 18 C -0.163 4.163 19 C -0.085 4.085 20 C 0.081 3.919 21 O -0.573 6.573 22 C -0.121 4.121 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.409 0.591 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.395 0.605 34 H 0.104 0.896 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 3.045 16.558 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.003 3.997 3 H 0.063 0.937 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.315 3.685 13 O -0.465 6.465 14 N -0.346 5.346 15 C -0.020 4.020 16 H 0.130 0.870 17 C -0.192 4.192 18 C -0.165 4.165 19 C -0.123 4.123 20 C 0.022 3.978 21 O -0.382 6.382 22 C -0.159 4.159 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.122 0.878 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.333 1.934 16.646 16.762 hybrid contribution 0.063 0.364 -1.403 1.451 sum -0.270 2.298 15.243 15.418 Atomic orbital electron populations 1.21502 0.95015 0.99437 1.01193 1.18817 0.95189 0.96250 0.89480 0.93698 1.21238 1.36066 1.08369 0.91222 0.93370 1.25570 0.95075 0.95600 1.01432 1.70012 1.45678 1.14655 1.24703 0.85667 0.78599 0.78856 0.79133 1.19691 1.20142 1.20436 1.21574 0.78016 0.83573 0.85320 1.90504 1.39919 1.28686 1.87379 1.45365 1.53466 1.31844 1.03905 1.21473 1.01605 0.98542 0.80397 0.86969 1.23430 0.95449 1.00526 0.99753 1.22460 1.00393 0.95265 0.98374 1.22587 0.96106 0.94677 0.98889 1.23152 0.94638 0.90956 0.89082 1.86446 1.93493 1.23313 1.34916 1.23186 0.98156 0.92312 1.02238 0.95048 0.92475 0.92837 0.92563 0.75415 0.86585 0.87303 0.90816 0.87883 0.90296 0.75504 0.87752 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 8.94 71.98 0.64 -4.34 16 2 C 0.02 1.19 2.50 -12.28 -0.03 1.16 16 3 H 0.05 2.35 8.09 -2.39 -0.02 2.33 16 4 C -0.53 -30.72 8.28 25.60 0.21 -30.51 16 5 H 0.05 2.99 6.79 -2.91 -0.02 2.97 16 6 C 0.02 1.28 5.17 84.66 0.44 1.71 16 7 N -0.91 -51.37 12.17 21.45 0.26 -51.11 16 8 Si 0.95 44.83 29.55 68.60 2.03 46.86 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.53 24.02 7.15 87.66 0.63 24.65 16 13 O -0.59 -31.34 15.03 -3.04 -0.05 -31.39 16 14 N -0.70 -23.44 5.45 -443.18 -2.42 -25.85 16 15 C 0.09 2.50 6.43 44.85 0.29 2.79 16 16 H 0.11 3.80 7.40 -2.39 -0.02 3.78 16 17 C -0.15 -3.28 10.46 30.46 0.32 -2.96 16 18 C -0.16 -3.56 3.02 -52.31 -0.16 -3.71 16 19 C -0.09 -1.71 7.93 30.98 0.25 -1.46 16 20 C 0.08 1.59 5.20 31.19 0.16 1.75 16 21 O -0.57 -10.60 13.67 -148.98 -2.04 -12.64 16 22 C -0.12 -2.31 7.92 31.03 0.25 -2.06 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.99 7.67 -2.39 -0.02 1.98 16 25 H 0.05 2.59 6.83 -2.39 -0.02 2.58 16 26 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.41 11.62 8.01 -92.71 -0.74 10.88 16 28 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.39 4.02 9.12 -74.05 -0.68 3.34 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.38 7.85 -2.38 -0.02 1.36 16 Total: -1.00 -68.71 297.26 0.47 -68.24 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.31 Total: 18.86 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 2.99 Total: -12.97 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -2.16 Total: -76.96 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -2.08 Total: -44.02 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -68.71 0.47 -68.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333555778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.965 kcal (2) G-P(sol) polarization free energy of solvation -68.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds