Wall clock time and date at job start Sun Mar 29 2020 22:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47601 * 2 1 4 4 C 1.46907 * 110.99737 * 295.57455 * 3 2 1 5 5 C 1.50695 * 109.46801 * 288.61140 * 4 3 2 6 6 H 1.08001 * 120.00154 * 357.51618 * 5 4 3 7 7 C 1.37882 * 119.99692 * 177.24150 * 5 4 3 8 8 N 1.31518 * 119.99695 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99979 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46935 * 89.99948 * 9 7 5 11 11 H 1.48500 * 109.47037 * 209.99861 * 9 7 5 12 12 H 1.48497 * 109.47113 * 329.99808 * 9 7 5 13 13 C 1.38380 * 110.99781 * 59.52354 * 3 2 1 14 14 N 1.31473 * 126.44090 * 252.08655 * 13 3 2 15 15 N 1.28424 * 110.51176 * 179.81650 * 14 13 3 16 16 N 1.28913 * 110.31355 * 0.45935 * 15 14 13 17 17 N 1.35310 * 126.44017 * 72.39450 * 13 3 2 18 18 C 1.46495 * 127.38031 * 359.97438 * 17 13 3 19 19 C 1.53005 * 109.47272 * 122.00079 * 18 17 13 20 20 C 1.53000 * 109.47372 * 242.00577 * 18 17 13 21 21 H 1.09000 * 109.47045 * 186.27505 * 1 2 3 22 22 H 1.08996 * 109.47173 * 306.28068 * 1 2 3 23 23 H 1.09005 * 109.46935 * 66.27829 * 1 2 3 24 24 H 1.09006 * 109.47689 * 239.99647 * 2 1 3 25 25 H 1.09003 * 109.46995 * 119.99901 * 2 1 3 26 26 H 1.09000 * 109.47120 * 168.61040 * 4 3 2 27 27 H 1.08999 * 109.47045 * 48.61087 * 4 3 2 28 28 H 0.97005 * 119.99745 * 179.97438 * 8 7 5 29 29 H 1.09008 * 109.47430 * 2.00467 * 18 17 13 30 30 H 1.09008 * 109.46861 * 60.00333 * 19 18 17 31 31 H 1.08997 * 109.47158 * 179.97438 * 19 18 17 32 32 H 1.08996 * 109.47381 * 300.00312 * 19 18 17 33 33 H 1.09002 * 109.47159 * 59.99489 * 20 18 17 34 34 H 1.08997 * 109.47223 * 180.02562 * 20 18 17 35 35 H 1.09008 * 109.46993 * 299.99809 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6371 2.0786 -1.2371 5 6 2.4440 1.5351 -2.3879 6 1 3.1968 0.7812 -2.2111 7 6 2.2174 1.9963 -3.6674 8 7 2.9220 1.5223 -4.6716 9 14 0.9105 3.2953 -3.9742 10 1 1.5187 4.6454 -3.8619 11 1 0.3466 3.1181 -5.3365 12 1 -0.1726 3.1551 -2.9680 13 6 1.5673 2.0709 1.1134 14 7 0.6513 3.0138 1.1309 15 7 0.4650 3.4381 2.3286 16 7 1.2407 2.8164 3.1493 17 7 1.9887 1.9013 2.3880 18 6 3.0060 0.9645 2.8712 19 6 4.1180 1.7402 3.5804 20 6 2.3671 -0.0215 3.8511 21 1 -0.3633 -1.0215 0.1123 22 1 -0.3633 0.6081 0.8284 23 1 -0.3633 0.4134 -0.9409 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8303 3.1460 -1.1299 27 1 0.5762 1.9191 -1.4299 28 1 2.7623 1.8465 -5.5719 29 1 3.4262 0.4172 2.0273 30 1 3.6979 2.2874 4.4244 31 1 4.8747 1.0431 3.9403 32 1 4.5732 2.4427 2.8823 33 1 1.5749 -0.5741 3.3459 34 1 3.1241 -0.7183 4.2110 35 1 1.9470 0.5257 4.6951 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333659603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:05 Heat of formation + Delta-G solvation = 103.065131 kcal Electronic energy + Delta-G solvation = -17914.335671 eV Core-core repulsion = 15177.761971 eV Total energy + Delta-G solvation = -2736.573700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.03707 -39.44164 -37.56173 -34.80760 -32.82726 -32.77949 -31.46417 -29.20486 -28.26459 -25.97348 -24.57679 -24.09017 -22.05764 -21.52346 -19.03515 -18.11950 -17.90629 -17.53507 -16.47142 -15.99744 -15.76691 -15.16494 -14.72725 -14.55136 -14.49258 -14.16530 -13.73125 -13.53424 -13.25015 -13.20071 -12.97838 -12.77691 -12.61182 -12.53536 -12.19486 -12.02288 -11.98056 -11.88908 -11.67007 -11.36804 -11.32461 -10.81200 -9.68495 -8.32764 -6.36685 -0.00167 0.76235 1.22117 1.33752 1.37694 1.47828 2.31325 2.56265 3.01242 3.20781 3.58555 3.83243 3.92689 3.99685 4.09719 4.17332 4.27183 4.39729 4.50258 4.64965 4.66464 4.74056 4.76160 4.81259 4.83216 5.00501 5.16921 5.18291 5.23029 5.25555 5.39620 5.54618 5.95804 6.33812 6.68323 7.26300 7.48458 8.81942 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030055 B = 0.007701 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.409197 B = 3635.099433 C = 3875.008331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 N -0.449 5.449 4 C 0.187 3.813 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.254 1.254 13 C 0.429 3.571 14 N -0.393 5.393 15 N -0.062 5.062 16 N -0.094 5.094 17 N -0.365 5.365 18 C 0.133 3.867 19 C -0.154 4.154 20 C -0.155 4.155 21 H 0.096 0.904 22 H 0.034 0.966 23 H 0.050 0.950 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.270 0.730 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -5.850 15.627 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.067 4.067 3 N -0.173 5.173 4 C 0.061 3.939 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.747 3.253 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.178 1.178 13 C 0.063 3.937 14 N -0.253 5.253 15 N -0.058 5.058 16 N -0.081 5.081 17 N -0.166 5.166 18 C 0.033 3.967 19 C -0.212 4.212 20 C -0.212 4.212 21 H 0.115 0.885 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.421 -4.948 16.087 16.836 hybrid contribution -0.492 0.282 -1.039 1.184 sum -0.913 -4.666 15.047 15.780 Atomic orbital electron populations 1.22342 0.96592 1.03564 1.01226 1.22433 0.94143 0.84931 1.05168 1.59069 1.54783 1.04317 0.99129 1.19986 0.95787 0.93563 0.84592 1.21002 1.20196 1.23887 0.90392 0.92191 1.25468 0.97730 0.98026 0.95766 1.69972 1.42063 1.44803 1.00419 0.86078 0.80791 0.80122 0.78338 1.19840 1.20071 1.17806 1.23469 0.89333 0.94024 0.86872 1.74907 1.18499 1.17090 1.14766 1.77809 1.15212 1.17397 0.95399 1.82237 1.06378 1.03235 1.16263 1.51911 1.30878 1.29557 1.04291 1.22187 0.85802 0.88366 1.00371 1.22126 0.97318 1.01325 1.00432 1.22183 1.02469 0.98315 0.98267 0.88529 0.94676 0.93064 0.87985 0.88070 0.96207 0.96218 0.92110 0.85971 0.91460 0.86553 0.93476 0.92272 0.86529 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.46 9.32 71.98 0.67 -4.79 16 2 C 0.06 1.85 5.74 86.30 0.50 2.34 16 3 N -0.45 -17.44 4.45 -711.44 -3.17 -20.61 16 4 C 0.19 8.77 3.15 85.55 0.27 9.04 16 5 C -0.52 -27.72 9.04 25.60 0.23 -27.49 16 6 H 0.06 3.44 7.82 -2.91 -0.02 3.42 16 7 C 0.03 1.66 5.47 84.66 0.46 2.12 16 8 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 9 Si 0.92 43.55 27.52 68.60 1.89 45.44 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.25 -11.68 6.46 99.48 0.64 -11.03 16 13 C 0.43 16.16 5.48 260.65 1.43 17.59 16 14 N -0.39 -16.63 11.12 -58.70 -0.65 -17.29 16 15 N -0.06 -2.48 13.38 37.02 0.50 -1.99 16 16 N -0.09 -3.23 13.85 37.02 0.51 -2.71 16 17 N -0.37 -11.32 3.32 -329.03 -1.09 -12.41 16 18 C 0.13 2.78 3.23 44.99 0.15 2.93 16 19 C -0.15 -2.73 9.46 71.98 0.68 -2.05 16 20 C -0.15 -2.30 9.51 71.98 0.68 -1.62 16 21 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.03 1.14 6.88 -2.39 -0.02 1.13 16 23 H 0.05 1.80 6.59 -2.38 -0.02 1.79 16 24 H 0.10 3.48 7.20 -2.38 -0.02 3.46 16 25 H 0.10 2.40 6.78 -2.39 -0.02 2.39 16 26 H 0.02 1.00 7.37 -2.39 -0.02 0.98 16 27 H 0.02 0.95 4.95 -2.39 -0.01 0.94 16 28 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 29 H 0.12 2.47 6.89 -2.38 -0.02 2.46 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -66.28 288.48 4.37 -61.92 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.02 Total: 4.39 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.07 Total: -1.93 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.61 Total: -109.82 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.89 Total: 45.44 kcal Total: -66.28 4.37 -61.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333659603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.981 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds